Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 2.8e-106 388.7 197 100.0
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 3.9e-36 155.6 205 50.2
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 3.7e-34 149.1 207 45.9
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 6.9e-33 144.8 207 44.9
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 1.5e-32 143.7 207 44.9
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.5e-32 143.7 207 44.9
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 1.5e-32 143.7 207 44.0
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 2.9e-31 139.4 198 46.0
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 5.5e-30 135.2 178 47.8
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 1.2e-29 134.0 194 44.8
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.6e-29 133.7 194 44.8
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 2.7e-29 132.9 194 44.3
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 1.1e-27 127.5 202 42.6
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 1.1e-27 127.5 202 40.1
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 1.1e-27 127.5 208 43.8
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 2.5e-27 126.3 184 45.1
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 9.7e-27 124.4 209 41.1
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 2.8e-26 122.9 208 40.4
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 6.3e-26 121.7 197 43.7
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 4.1e-25 119.0 201 43.8
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 4.1e-25 119.0 193 43.0
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 4.1e-25 119.0 140 51.4
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 3.4e-24 115.9 205 39.5
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 5.9e-24 115.2 194 41.2
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.7e-23 113.6 202 40.6
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 1.7e-23 113.6 205 39.0
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 3.8e-23 112.5 176 42.0
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 5.0e-23 112.1 206 39.8
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 6.5e-23 111.7 206 37.9
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 3.2e-22 109.4 209 41.6
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 4.2e-22 109.0 197 41.1
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 1.6e-21 107.1 210 38.6
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 2.1e-21 106.7 140 45.0
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 2.7e-21 106.3 203 40.4
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 6.1e-21 105.1 131 46.6
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 6.1e-21 105.1 209 37.8
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 6.1e-21 105.1 141 44.7
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 1.0e-20 104.4 208 37.5
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.0e-20 104.4 207 37.7
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 1.8e-20 103.6 197 40.1
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 2.3e-20 103.2 141 46.8
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 3.0e-20 102.8 206 36.4
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 5.1e-20 102.1 234 38.5
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 6.7e-20 101.7 199 40.2
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 6.7e-20 101.7 209 37.3
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 8.8e-20 101.3 175 41.7
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 1.5e-19 100.5 149 46.3
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 4.4e-19 99.0 142 43.7
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 5.7e-19 98.6 204 37.3
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 7.4e-19 98.2 212 36.8
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 2.2e-18 96.7 114 46.5
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 3.7e-18 95.9 181 38.7
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 4.8e-18 95.5 142 43.7
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 8.2e-18 94.7 119 46.2
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 8.2e-18 94.7 144 43.8
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 7.0e-17 91.7 193 35.8
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 1.5e-16 90.5 199 34.2
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 5.9e-16 88.6 196 36.2
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 2.2e-15 86.7 202 35.1
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 1.9e-14 83.6 213 35.7
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 1.9e-14 83.6 203 34.5
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 2.7e-13 79.7 194 33.5
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 2.7e-13 79.7 195 34.4
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 6.1e-13 78.6 191 28.8
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 6.1e-13 78.6 196 33.7
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 8.0e-13 78.2 201 33.8
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 8.0e-13 78.2 195 32.8
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 1.0e-12 77.8 201 33.3
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 1.8e-12 77.0 195 34.9
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.8e-12 77.0 152 35.5
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 3.0e-12 76.3 199 32.2
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 3.9e-12 75.9 45 75.6
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 3.9e-12 75.9 201 32.3
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 1.1e-11 74.3 131 42.0
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.5e-11 73.9 203 33.5
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 2.0e-11 73.6 173 33.5
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 3.3e-11 72.8 195 33.8
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 4.4e-11 72.4 97 42.3
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 5.7e-11 72.0 97 42.3
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 7.4e-11 71.6 92 45.7
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 9.7e-11 71.2 185 34.6
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 1.3e-10 70.9 76 50.0
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 1.7e-10 70.5 97 42.3
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 1.7e-10 70.5 108 42.6
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 2.8e-10 69.7 164 34.1
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 2.8e-10 69.7 164 34.8
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 3.7e-10 69.3 36 80.6
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 4.8e-10 68.9 166 33.7
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 8.2e-10 68.2 104 39.4
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 8.2e-10 68.2 155 32.9
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.4e-09 67.4 36 77.8
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.4e-09 66.6 104 42.3
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 2.4e-09 66.6 70 52.9
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 2.4e-09 66.6 61 50.8
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 5.3e-09 65.5 61 49.2
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 5.3e-09 65.5 59 49.2
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 9.1e-09 64.7 132 34.1
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 1.0e-07 61.2 73 43.8
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 3.8e-07 59.3 120 34.2
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.0e-07 58.9 71 42.3
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.0e-07 58.9 71 42.3
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 8.5e-07 58.2 29 82.8
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 8.5e-07 58.2 98 36.7
TAR622G0697 Trochodendron aralioides HOM05D002803 ORTHO05D003089 8.5e-07 58.2 151 30.5
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 1.1e-06 57.8 116 37.1
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.9e-06 57.0 35 60.0
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 3.2e-06 56.2 35 60.0
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 3.2e-06 56.2 35 60.0
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 4.2e-06 55.8 94 41.5
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 5.5e-06 55.5 96 37.5
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 7.2e-06 55.1 38 57.9
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 9.4e-06 54.7 41 51.2
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 9.4e-06 54.7 90 37.8
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 9.4e-06 54.7 40 52.5
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 9.4e-06 54.7 31 67.7


User provided reference genes

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