Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1501.9 749 100.0
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1312.4 751 85.8
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1311.2 751 85.9
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1309.3 750 86.3
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1279.2 751 84.7
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1276.9 749 84.8
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1274.6 749 83.3
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 748 83.7
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1271.9 749 83.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 747 83.9
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 749 84.5
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 749 83.8
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1263.4 752 84.4
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1263.1 749 83.7
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1263.1 755 83.2
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1262.3 749 82.8
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1261.1 749 83.7
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1260.7 749 83.0
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 751 82.6
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1257.7 749 82.9
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 750 82.8
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 747 82.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 749 82.9
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 749 82.2
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 747 82.6
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 747 82.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1253.0 750 82.4
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 750 81.7
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1251.9 747 82.7
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 747 82.9
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 750 82.1
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 745 83.9
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 747 83.0
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1248.0 747 81.7
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1248.0 749 82.4
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 750 81.6
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 750 82.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 750 82.1
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 747 82.2
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 748 81.6
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 749 82.2
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 724 84.9
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 718 85.0
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 748 82.1
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 749 81.6
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 750 82.9
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 750 82.1
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 782 79.4
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 749 81.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 751 81.5
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1231.9 750 81.2
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1231.9 750 81.5
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 805 77.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1230.3 749 80.6
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 750 80.4
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 749 82.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1228.4 748 81.8
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 750 80.8
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 750 80.7
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 750 80.7
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 749 81.3
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 749 80.5
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 749 81.2
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 749 81.2
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 750 80.8
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 749 81.3
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 751 80.7
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 749 80.8
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 750 80.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 749 81.7
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 750 80.5
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 749 80.6
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 750 80.8
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 759 81.0
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1215.3 751 80.0
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 748 80.1
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 749 80.6
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 749 80.5
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 749 80.2
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 759 80.6
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 749 80.2
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 753 79.7
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 754 80.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 749 80.1
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 748 79.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 749 80.0
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 749 80.0
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 749 79.0
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 743 80.8
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 755 79.3
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 749 80.5
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 782 76.9
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 749 80.4
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1196.8 749 80.0
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1196.8 744 80.6
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1196.0 844 73.1
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 699 82.8
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 750 79.5
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1192.2 707 82.9
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 752 79.0
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 744 79.8
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 720 79.6
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1162.5 749 77.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1161.7 657 85.8
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 761 76.0
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1152.5 752 76.5
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1136.7 750 75.9
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1132.5 666 84.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1130.9 657 84.2
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1129.4 657 84.0
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1128.2 750 75.3
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1118.2 723 76.6
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1102.8 752 75.1
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1100.9 657 83.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1094.7 1048 57.1
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1089.3 760 72.2
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 7.3e-309 1063.5 626 84.7
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.1e-301 1039.6 750 71.9
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.3e-281 973.0 678 69.0
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 6.4e-281 970.7 680 67.8
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 8.4e-281 970.3 682 70.1
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.3e-277 958.4 684 68.9
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.3e-277 958.0 675 69.2
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.3e-277 958.0 675 69.2
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.1e-276 955.7 675 69.0
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 6.1e-255 884.4 595 75.1
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.4e-251 872.5 679 62.2
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 3.1e-251 872.1 595 74.6
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 2.2e-228 796.2 679 57.9
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 4.5e-226 788.5 680 57.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.6e-213 746.1 676 56.1
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.5e-208 730.3 679 61.1
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 3.6e-199 699.1 703 50.8
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 3.1e-174 616.3 751 45.8
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.9e-160 570.5 324 88.3
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 2.4e-158 563.5 361 75.6
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.0e-157 560.5 305 88.5
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 2.9e-140 503.4 302 83.1
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-131 474.6 301 79.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 9.1e-126 455.3 307 73.6
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.7e-119 433.3 294 72.4
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 5.7e-104 382.9 236 77.5
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.2e-94 350.5 298 63.8
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 5.0e-92 343.2 241 71.0
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 6.6e-92 342.8 297 62.3
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.8e-90 337.4 219 78.1
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.1e-89 335.5 227 75.8
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 5.2e-73 280.0 172 77.3
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.7e-68 265.0 366 40.4
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-65 255.0 125 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.1e-65 254.2 403 44.2
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.0e-65 252.7 168 74.4
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 9.3e-62 242.7 260 52.7
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-58 231.5 113 96.5
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 3.5e-45 187.6 143 69.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.0e-44 186.0 149 66.4
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.1e-41 174.5 176 55.7
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 3.8e-39 167.5 102 72.5
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 4.3e-35 154.1 142 53.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 5.7e-35 153.7 122 63.9
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.2e-34 151.8 116 65.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.0e-31 142.9 138 58.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 4.2e-30 137.5 83 80.7
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 4.6e-29 134.0 105 62.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-26 125.2 75 80.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.2e-26 123.2 61 90.2
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.6e-24 118.2 99 64.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.9e-22 112.1 221 29.9
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 9.4e-22 109.8 143 50.3
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.7e-15 89.0 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 8.5e-15 86.7 49 77.6
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 2.6e-11 75.1 42 83.3
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 3.3e-11 74.7 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 5.5e-06 57.4 35 71.4


User provided reference genes

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