Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 8.0e-258 893.3 460 100.0
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 7.4e-203 710.7 464 80.0
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.1e-202 709.1 461 79.2
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 6.3e-202 707.6 461 78.7
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 4.1e-201 704.9 471 79.0
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 2.0e-200 702.6 446 80.7
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.7e-199 699.5 464 77.6
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 6.5e-199 697.6 461 79.2
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 8.4e-199 697.2 463 78.2
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.1e-198 696.8 464 78.4
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 4.2e-198 694.9 426 83.1
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 5.5e-198 694.5 456 79.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 2.7e-197 692.2 447 80.3
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 6.1e-197 691.0 464 77.2
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 7.9e-197 690.6 466 77.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.3e-196 689.9 475 75.6
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.3e-196 689.9 453 79.0
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.8e-196 689.5 430 82.1
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.1e-195 686.8 427 81.7
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 2.5e-195 685.6 447 79.9
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 5.7e-195 684.5 471 76.9
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.6e-194 682.9 457 78.8
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 2.8e-194 682.2 479 76.0
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 4.8e-194 681.4 472 75.6
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 4.8e-194 681.4 451 78.5
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 8.2e-194 680.6 449 78.2
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.4e-193 679.9 455 78.2
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.4e-193 679.9 450 76.4
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.8e-193 679.5 454 76.4
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 2.4e-193 679.1 449 78.6
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 5.3e-193 677.9 447 78.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 2.6e-192 675.6 443 77.4
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 5.9e-192 674.5 465 74.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 7.7e-192 674.1 468 74.4
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.7e-192 674.1 466 76.6
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 7.7e-192 674.1 453 76.8
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.0e-191 673.7 440 80.0
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.7e-191 672.9 426 81.2
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.7e-191 672.9 446 76.7
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.1e-190 670.2 429 79.0
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.2e-190 668.7 423 79.9
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.2e-190 668.3 485 72.0
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 7.2e-190 667.5 480 72.5
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.2e-189 666.8 426 80.3
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 7.9e-189 664.1 426 80.0
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.4e-188 663.3 426 79.8
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 2.3e-188 662.5 427 79.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 3.0e-188 662.1 426 79.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 3.9e-188 661.8 453 77.5
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 5.1e-188 661.4 438 76.0
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 8.8e-188 660.6 436 78.7
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 8.8e-188 660.6 470 73.8
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.5e-187 659.8 426 79.6
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.5e-187 659.8 461 74.0
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.5e-187 659.8 425 79.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 5.7e-187 657.9 450 76.0
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.3e-186 656.8 447 77.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.7e-186 656.4 450 76.0
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 6.3e-186 654.4 447 76.3
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 6.3e-186 654.4 448 75.4
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 8.2e-186 654.1 468 72.4
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 8.2e-186 654.1 471 72.8
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.4e-185 653.3 436 76.1
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 3.1e-185 652.1 446 75.8
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.2e-184 650.2 426 78.4
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.5e-184 649.8 426 78.2
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.5e-184 649.8 426 78.2
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.6e-184 649.0 446 75.8
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.4e-184 648.7 447 76.1
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 4.5e-184 648.3 450 75.3
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 7.7e-184 647.5 450 75.6
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 2.2e-183 646.0 430 77.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.8e-183 645.2 426 77.7
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 3.8e-183 645.2 451 74.7
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 6.5e-183 644.4 450 74.2
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 8.5e-183 644.0 451 74.9
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.4e-182 643.3 452 75.0
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.9e-182 642.9 450 75.1
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 2.5e-182 642.5 464 72.6
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 4.7e-181 638.3 450 74.7
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.8e-180 636.3 413 79.2
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.1e-179 633.6 449 72.8
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.3e-179 632.1 409 79.5
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 7.4e-179 630.9 444 74.3
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 9.7e-179 630.6 444 74.3
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 9.7e-179 630.6 407 80.8
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-178 630.2 452 73.2
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.4e-177 626.7 438 75.3
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.4e-177 625.9 475 69.3
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 3.1e-177 625.5 399 80.2
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 3.2e-174 615.5 457 70.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.1e-173 612.8 406 78.3
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 3.6e-173 612.1 430 74.2
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.1e-171 607.1 528 63.3
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 4.8e-170 601.7 429 71.8
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.8e-169 599.7 399 79.2
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.6e-168 596.7 422 72.0
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 7.7e-168 594.3 421 75.1
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.9e-167 592.4 422 74.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 8.5e-167 590.9 419 74.2
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 9.5e-158 560.8 409 72.1
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.2e-157 560.5 397 75.3
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.6e-157 560.1 423 68.6
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.4e-156 557.0 444 66.4
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.8e-156 556.6 386 72.5
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 8.6e-135 484.6 340 77.9
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.1e-134 484.2 427 59.5
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.2e-131 474.2 452 60.4
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 5.8e-131 471.9 410 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.7e-130 470.3 360 66.9
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.3e-124 449.9 302 79.5
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 2.3e-124 449.9 329 69.3
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 5.8e-123 445.3 437 57.4
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.9e-113 413.7 434 54.1
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 3.2e-105 386.3 388 57.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.2e-104 384.4 240 83.3
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.6e-80 303.1 202 75.7
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.9e-78 297.4 184 84.8
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.7e-78 295.8 215 73.5
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.7e-78 295.8 195 75.4
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.1e-71 272.7 204 68.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.8e-68 264.2 218 61.5
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 7.4e-62 242.3 147 78.9
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.8e-61 239.6 182 73.1
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 8.8e-55 218.8 443 36.8
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.8e-47 194.5 124 73.4
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.3e-37 161.8 140 65.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.2e-37 161.0 137 65.7
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 1.8e-31 141.4 102 66.7
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 2.3e-31 141.0 260 39.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.0e-31 140.6 158 57.0
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.0e-31 140.6 99 74.7
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.8e-31 139.4 92 76.1
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.4e-28 131.7 260 37.3
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 7.0e-28 129.4 101 65.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 6.8e-23 112.8 91 65.9
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 3.5e-19 100.5 117 54.7
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.3e-18 98.6 87 57.5
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 6.8e-15 86.3 88 60.2
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 3.7e-13 80.5 45 73.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 3.7e-13 80.5 45 73.3
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.1e-12 79.0 166 37.3
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.9e-12 78.2 48 75.0
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.9e-12 78.2 48 75.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 4.1e-12 77.0 76 56.6
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.7e-11 74.3 62 53.2
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 4.6e-11 73.6 64 62.5
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 6.0e-11 73.2 64 62.5
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.0e-10 72.4 76 55.3
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.0e-10 72.4 178 33.1
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.7e-10 71.6 64 60.9
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.7e-10 71.6 80 53.8
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-10 71.6 64 60.9
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-10 71.6 64 60.9
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-10 71.6 64 60.9
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-10 71.6 63 61.9
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-10 71.6 64 60.9
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.7e-10 71.6 64 60.9
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.7e-10 71.6 64 60.9
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 60.9
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 3.0e-10 70.9 64 59.4
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 5.6e-09 66.6 73 50.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 3.6e-08 63.9 66 57.6
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.0e-07 60.5 48 62.5
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 4.0e-07 60.5 63 57.1
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 2.6e-06 57.8 43 69.8
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 2.6e-06 57.8 47 66.0


User provided reference genes

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