Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.4e-184 649.4 317 100.0
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 5.6e-109 398.3 196 99.0
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 1.6e-100 370.2 274 63.9
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 3.2e-96 355.9 278 62.2
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.6e-95 353.6 237 67.5
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 2.7e-95 352.8 236 67.4
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.7e-94 350.1 277 62.8
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 2.3e-94 349.7 278 61.2
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.0e-94 349.4 237 67.1
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 5.1e-94 348.6 275 60.7
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 1.6e-92 343.6 236 66.5
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.4e-91 339.7 280 60.0
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 9.9e-90 334.3 252 64.3
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.3e-89 334.0 286 56.3
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 1.3e-89 334.0 286 57.7
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 8.4e-89 331.3 285 58.9
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 2.4e-88 329.7 283 56.5
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 5.4e-88 328.6 281 56.9
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.6e-87 327.0 261 60.2
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 4.6e-87 325.5 272 58.5
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 1.3e-86 323.9 283 56.5
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 1.3e-84 317.4 280 55.7
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 8.1e-84 314.7 245 61.2
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 4.0e-83 312.4 272 54.8
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 1.2e-82 310.8 280 56.4
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 1.5e-82 310.5 275 54.9
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 9.9e-82 307.8 234 59.4
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 1.3e-81 307.4 271 53.9
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 2.9e-81 306.2 235 60.9
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 6.4e-81 305.1 237 59.5
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 8.4e-81 304.7 235 60.0
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 1.4e-80 303.9 278 55.4
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 1.4e-80 303.9 234 58.1
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 9.3e-80 301.2 296 54.4
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 9.3e-80 301.2 265 54.7
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.2e-79 300.8 260 57.3
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 2.1e-79 300.1 280 52.9
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.7e-79 299.7 241 58.1
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.7e-79 299.7 260 57.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 6.0e-79 298.5 238 61.3
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 6.0e-79 298.5 234 57.7
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.8e-78 297.0 243 59.7
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 3.0e-78 296.2 217 63.6
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 3.0e-78 296.2 239 58.2
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 3.9e-78 295.8 242 56.6
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 5.1e-78 295.4 241 57.3
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 8.7e-78 294.7 249 55.8
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 8.7e-78 294.7 285 51.2
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 3.3e-77 292.7 279 51.6
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 5.6e-77 292.0 306 49.7
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 7.4e-77 291.6 236 56.8
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 4.8e-76 288.9 242 54.1
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.8e-75 287.0 275 49.5
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 2.0e-74 283.5 275 48.4
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 9.3e-72 274.6 236 54.2
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 1.0e-70 271.2 239 54.4
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 2.5e-69 266.5 251 49.8
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 3.3e-69 266.2 245 50.6
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 7.4e-69 265.0 249 49.4
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 7.4e-69 265.0 249 51.0
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 1.6e-68 263.8 249 49.8
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 6.3e-68 261.9 280 46.8
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 8.2e-68 261.5 245 50.6
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 8.2e-68 261.5 249 48.6
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 1.8e-67 260.4 245 50.6
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 1.8e-67 260.4 245 50.6
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 2.4e-67 260.0 245 50.2
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.5e-66 257.3 193 63.2
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 1.7e-65 253.8 261 47.1
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 1.1e-64 251.1 264 51.1
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 3.2e-64 249.6 247 49.8
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 9.3e-64 248.1 206 55.3
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 9.3e-64 248.1 206 56.8
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 3.6e-63 246.1 243 47.7
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 4.6e-63 245.7 239 50.6
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 1.6e-60 237.3 240 50.0
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 1.8e-59 233.8 239 48.1
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.2e-58 231.1 174 63.2
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 2.6e-58 229.9 184 57.1
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.4e-56 224.2 184 59.2
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 4.6e-55 219.2 237 47.3
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 7.9e-55 218.4 167 61.1
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 1.8e-54 217.2 196 52.6
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.8e-54 217.2 185 57.8
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 3.9e-54 216.1 176 60.8
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.0e-53 213.8 184 57.6
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.0e-53 213.8 167 59.9
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 5.7e-53 212.2 201 53.7
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 9.4e-48 194.9 151 57.6
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 7.9e-47 191.8 200 49.5
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 4.4e-45 186.0 185 48.6
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 2.5e-40 170.2 114 67.5
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 1.6e-39 167.5 106 69.8
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 3.3e-37 159.8 112 63.4
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.7e-34 150.2 107 62.6
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 1.4e-27 127.9 245 29.4
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 1.0e-22 111.7 266 28.2
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 2.9e-17 93.6 71 56.3
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 6.6e-17 92.4 73 58.9
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.5e-16 91.3 72 56.9
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 8.9e-14 82.0 67 55.2
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.0e-13 80.9 59 59.3
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 3.3e-08 63.5 40 65.0


User provided reference genes

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