Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.5e-133 479.9 322 100.0
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.9e-104 383.3 321 88.5
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.5e-81 304.7 328 63.1
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 5.5e-80 302.0 314 67.5
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 3.6e-79 299.3 325 61.8
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 5.2e-78 295.4 319 66.8
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 8.8e-78 294.7 319 67.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 7.5e-77 291.6 317 64.7
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.7e-76 290.4 328 66.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.7e-76 290.4 320 64.7
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 8.3e-76 288.1 321 68.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.4e-75 287.3 330 65.5
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 3.1e-75 286.2 314 64.0
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 3.1e-75 286.2 319 65.5
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.1e-75 286.2 317 61.2
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 4.1e-75 285.8 323 68.7
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.1e-75 285.8 324 69.1
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 4.1e-75 285.8 318 61.6
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.4e-75 285.4 323 66.3
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.2e-74 284.3 325 68.3
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-74 284.3 336 64.9
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.0e-74 283.5 317 65.9
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 3.5e-74 282.7 327 59.9
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.5e-74 282.7 324 63.0
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.5e-74 282.7 305 64.3
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 4.5e-74 282.3 324 65.1
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 6.6e-73 278.5 309 67.3
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.6e-73 278.1 329 64.4
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-72 277.3 314 59.6
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 4.3e-72 275.8 321 64.8
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 5.6e-72 275.4 318 59.4
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 5.6e-72 275.4 313 61.7
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.2e-71 274.2 328 57.3
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.6e-71 273.9 322 63.7
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.6e-71 273.9 315 61.3
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.6e-71 273.9 332 59.0
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.6e-71 272.7 328 57.0
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.6e-71 272.7 328 57.0
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.3e-70 270.0 317 64.0
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.3e-70 270.0 314 61.5
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.0e-70 269.6 325 65.2
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 5.2e-70 268.9 331 59.2
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.8e-70 268.5 329 64.7
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 8.9e-70 268.1 339 56.9
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.6e-69 266.5 334 58.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 3.4e-69 266.2 319 62.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.4e-69 266.2 312 65.7
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.4e-69 265.8 317 69.4
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 5.7e-69 265.4 324 66.7
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 5.7e-69 265.4 324 67.0
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 7.5e-69 265.0 328 68.6
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.9e-68 263.1 316 59.5
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.9e-68 263.1 316 59.5
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.7e-68 262.7 316 64.2
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 3.7e-68 262.7 316 68.0
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 6.4e-68 261.9 312 58.0
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 8.3e-68 261.5 318 59.1
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 8.3e-68 261.5 318 59.1
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.1e-67 261.2 323 55.1
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.4e-67 260.0 323 61.9
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.2e-67 259.6 316 65.5
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 5.4e-67 258.8 320 60.3
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 7.0e-67 258.5 312 66.3
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 7.0e-67 258.5 325 56.9
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.2e-66 257.7 311 60.5
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.6e-66 257.3 322 65.5
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 4.6e-66 255.8 328 57.6
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.6e-66 255.8 340 57.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.0e-65 254.6 323 59.4
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-65 254.2 320 61.2
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 3.9e-65 252.7 326 56.7
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.9e-65 252.7 319 60.2
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.0e-65 252.3 320 59.7
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.1e-64 251.1 323 59.8
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.5e-64 250.8 322 56.8
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.5e-64 250.8 299 65.2
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 9.5e-64 248.1 320 51.2
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 9.5e-64 248.1 315 64.8
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 9.5e-64 248.1 310 64.2
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.2e-63 247.7 309 60.2
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-63 247.7 311 63.7
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-63 247.7 311 63.7
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.2e-63 247.7 327 55.7
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.6e-63 247.3 332 55.1
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.6e-63 247.3 331 54.4
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 3.6e-63 246.1 318 62.3
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 3.6e-63 246.1 315 64.1
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.8e-62 243.8 297 63.0
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.2e-61 241.1 398 51.0
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.5e-61 240.7 321 66.4
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.6e-61 240.0 322 55.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.4e-61 239.6 340 49.7
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 7.5e-61 238.4 314 63.1
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 9.8e-61 238.0 333 52.6
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 9.8e-61 238.0 318 60.1
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.3e-60 237.7 334 56.0
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.2e-60 236.9 370 53.5
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.9e-60 236.5 312 57.1
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 8.3e-60 235.0 321 57.9
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.1e-59 234.6 326 49.4
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 4.1e-59 232.6 310 60.6
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.1e-59 232.6 323 62.2
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 5.4e-59 232.3 317 60.6
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 9.2e-59 231.5 312 62.5
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 2.0e-58 230.3 303 48.2
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 3.5e-58 229.6 313 61.3
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 7.8e-58 228.4 314 58.3
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 7.8e-58 228.4 323 57.6
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.9e-57 226.1 323 57.3
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 3.9e-57 226.1 318 54.1
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 8.6e-57 224.9 317 58.0
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 8.6e-57 224.9 320 54.4
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.1e-56 224.6 332 53.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.9e-56 223.8 317 57.4
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.5e-56 223.4 311 54.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 4.3e-56 222.6 329 56.2
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 5.6e-56 222.2 333 57.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 7.3e-56 221.9 319 53.9
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.4e-54 217.6 329 53.5
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 5.2e-54 215.7 320 56.2
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 6.8e-54 215.3 334 52.4
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.6e-53 213.4 317 59.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.4e-53 212.6 312 48.7
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 5.8e-53 212.2 332 55.7
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 9.8e-53 211.5 332 52.1
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.7e-52 210.7 305 54.1
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-52 210.3 282 55.3
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 6.4e-52 208.8 309 57.0
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.4e-51 206.8 314 51.3
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 5.4e-51 205.7 330 57.6
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 7.8e-50 201.8 311 59.2
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.7e-49 200.7 317 51.7
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.1e-48 198.0 322 52.8
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 9.5e-48 194.9 314 50.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.2e-47 194.5 319 48.9
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.8e-47 193.4 313 51.8
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.4e-46 191.0 244 57.8
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 8.9e-46 188.3 134 67.2
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 4.4e-45 186.0 263 63.9
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.3e-44 184.5 132 65.9
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.1e-42 177.2 324 46.9
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.0e-41 174.9 137 63.5
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.0e-41 173.3 292 49.7
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.5e-40 171.0 307 48.5
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.9e-40 170.6 137 63.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.9e-40 170.6 326 45.4
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.1e-38 163.3 312 47.8
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.5e-37 161.0 134 61.2
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 3.5e-34 149.8 139 56.1
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 3.0e-33 146.7 142 53.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.8e-31 140.2 107 66.4
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.9e-27 127.5 221 48.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 5.4e-27 125.9 328 40.5
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 2.1e-26 124.0 318 49.4
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 4.6e-26 122.9 336 48.8
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 5.1e-25 119.4 107 56.1
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.1e-24 118.2 92 70.7
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.9e-24 117.5 334 41.6
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.9e-24 117.5 109 67.0
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 7.4e-24 115.5 91 65.9
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.3e-23 114.8 344 47.1
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 2.1e-23 114.0 93 67.7
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.3e-20 104.8 76 69.7
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 4.9e-20 102.8 75 69.3
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.9e-19 100.9 128 48.4
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.2e-19 100.1 67 77.6
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.2e-19 100.1 63 77.8
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 9.3e-19 98.6 202 60.4
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.9e-16 90.9 97 55.7
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 4.3e-16 89.7 90 52.2
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 5.6e-16 89.4 60 66.7
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.4e-14 84.0 95 52.6
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 4.0e-14 83.2 82 57.3
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.4e-13 80.1 141 36.9
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 6.5e-12 75.9 62 53.2
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.3e-11 72.0 96 50.0
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-10 71.6 41 85.4
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 4.6e-10 69.7 83 48.2
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-08 64.7 85 47.1
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.1e-07 60.8 75 50.7
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.1e-06 58.5 278 49.6
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 1.1e-06 58.5 49 65.3


User provided reference genes

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