Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 9.3e-123 444.1 333 100.0
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 7.1e-46 188.7 290 45.2
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 9.2e-46 188.3 305 66.2
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 4.6e-45 186.0 312 64.4
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 1.3e-44 184.5 304 46.7
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 3.0e-44 183.3 296 53.0
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.2e-40 171.4 280 54.3
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 1.3e-39 167.9 315 62.5
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 2.2e-39 167.2 321 39.9
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 4.9e-39 166.0 280 53.6
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 1.9e-38 164.1 293 63.1
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 9.3e-38 161.8 294 64.3
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 9.3e-38 161.8 299 64.9
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 3.5e-37 159.8 314 60.8
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 3.5e-37 159.8 294 34.7
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 5.1e-36 156.0 280 53.9
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 1.1e-35 154.8 296 37.5
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 1.5e-35 154.5 314 38.9
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 9.6e-35 151.8 310 31.9
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 2.1e-34 150.6 303 43.2
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 2.8e-34 150.2 301 49.5
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 4.8e-34 149.4 264 68.2
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 9.0e-33 145.2 309 43.0
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 4.4e-32 142.9 285 62.5
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 4.4e-32 142.9 285 62.5
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 5.8e-32 142.5 282 59.9
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 7.6e-32 142.1 291 44.0
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 1.3e-31 141.4 293 31.4
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 2.4e-30 137.1 320 56.2
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 5.4e-30 136.0 296 50.3
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 5.4e-30 136.0 304 44.7
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 1.2e-29 134.8 320 55.3
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 1.6e-29 134.4 309 32.7
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 1.6e-29 134.4 298 61.7
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 2.1e-29 134.0 280 45.7
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 2.7e-29 133.7 265 64.5
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 4.6e-29 132.9 310 55.8
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 6.0e-29 132.5 319 55.2
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 7.9e-29 132.1 270 33.7
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 1.0e-28 131.7 287 48.4
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 1.3e-28 131.3 292 44.2
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 1.7e-28 131.0 289 47.8
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 1.7e-28 131.0 289 47.8
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 3.9e-28 129.8 287 46.7
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 5.1e-28 129.4 285 47.7
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 5.1e-28 129.4 285 47.7
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 1.1e-27 128.3 291 45.4
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 3.3e-27 126.7 288 44.1
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 9.6e-27 125.2 290 39.7
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 1.1e-25 121.7 321 53.6
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.4e-25 121.3 305 37.4
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 1.4e-25 121.3 287 49.8
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 1.8e-25 120.9 323 38.4
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 2.4e-25 120.6 297 41.4
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 3.1e-25 120.2 287 47.4
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 3.1e-25 120.2 285 63.5
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 5.3e-25 119.4 296 54.1
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 5.3e-25 119.4 286 60.5
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 6.9e-25 119.0 296 53.7
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 1.2e-24 118.2 288 42.4
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.5e-24 117.9 303 38.0
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 2.0e-24 117.5 113 54.9
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 3.4e-24 116.7 288 56.9
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 5.8e-24 115.9 284 57.4
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 7.6e-24 115.5 283 59.7
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 2.2e-23 114.0 292 57.2
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 6.4e-23 112.5 283 59.4
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 8.4e-23 112.1 326 54.0
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 7.1e-22 109.0 283 28.6
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 2.3e-20 104.0 291 57.7
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 3.3e-19 100.1 246 48.8
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 5.6e-19 99.4 310 50.3
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 9.6e-19 98.6 107 43.9
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 9.6e-19 98.6 312 31.4
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 2.0e-16 90.9 120 39.2
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 1.3e-15 88.2 293 25.6
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 2.9e-15 87.0 136 36.8
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 1.4e-14 84.7 86 47.7
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 1.9e-14 84.3 292 55.8
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 3.2e-14 83.6 98 42.9
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 7.1e-14 82.4 291 37.8
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 7.1e-14 82.4 131 38.2
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 7.1e-14 82.4 112 42.0
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 6.0e-13 79.3 77 54.5
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 2.3e-12 77.4 114 39.5
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.1e-11 75.1 63 55.6
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 5.7e-11 72.8 117 35.9
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.8e-09 67.8 102 36.3
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 5.0e-07 59.7 57 52.6
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 8.4e-07 58.9 77 45.5
Haze_17252 Corylus avellana HOM05D007655 ORTHO05D009698 2.5e-06 57.4 73 46.6


User provided reference genes

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