Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.1e-145 520.0 277 100.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.8e-104 382.5 275 70.9
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.6e-104 382.1 232 81.0
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 6.2e-104 381.3 275 71.6
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.1e-104 380.9 275 70.9
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.4e-103 380.2 212 86.3
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 5.2e-103 378.3 211 87.2
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 7.6e-102 374.4 212 85.4
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 2.2e-101 372.9 219 83.1
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 2.9e-101 372.5 260 74.6
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 6.4e-101 371.3 218 82.6
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.4e-100 370.2 211 84.4
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.9e-100 369.8 228 78.9
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.4e-100 369.4 212 84.4
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.2e-100 369.0 299 65.2
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.1e-100 368.6 211 82.9
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 4.1e-100 368.6 267 71.2
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 4.1e-100 368.6 229 79.0
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 5.4e-100 368.2 267 71.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 5.4e-100 368.2 215 82.8
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 5.4e-100 368.2 238 78.2
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.2e-99 367.1 215 82.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.1e-99 366.3 218 80.7
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 7.8e-99 364.4 214 83.2
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.3e-98 362.8 218 80.7
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 8.6e-98 360.9 220 80.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.5e-97 360.1 212 82.1
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 2.5e-97 359.4 227 78.4
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 5.6e-97 358.2 212 82.5
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 5.6e-97 358.2 212 82.5
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 9.6e-97 357.5 214 81.3
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.2e-96 357.1 221 80.1
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.2e-96 357.1 221 79.6
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.6e-96 356.7 216 81.0
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.8e-96 355.9 217 79.7
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.6e-96 355.5 230 77.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 3.6e-96 355.5 220 77.7
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.1e-95 354.0 215 80.0
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.4e-95 353.6 218 78.9
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.4e-95 353.6 211 83.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 2.4e-95 352.8 212 81.1
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.1e-95 352.4 222 77.9
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 4.0e-95 352.1 215 79.1
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 5.2e-95 351.7 225 76.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 8.9e-95 350.9 221 78.3
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 8.9e-95 350.9 216 79.2
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.2e-94 350.5 222 77.0
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.5e-94 350.1 212 80.7
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.5e-94 350.1 216 78.2
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 2.0e-94 349.7 211 80.6
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-94 349.0 216 78.2
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 4.4e-94 348.6 218 79.4
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 5.8e-94 348.2 211 80.1
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.8e-94 348.2 222 76.6
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 7.6e-94 347.8 215 78.6
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 7.6e-94 347.8 215 78.6
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 9.9e-94 347.4 211 79.6
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 9.9e-94 347.4 211 79.6
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 9.9e-94 347.4 216 77.8
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.3e-93 347.1 231 76.2
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-93 346.7 215 78.1
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.7e-93 346.7 215 78.1
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.2e-93 346.3 215 79.5
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.9e-93 345.9 219 75.8
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.9e-93 345.9 219 75.8
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.8e-93 345.5 215 78.1
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 4.9e-93 345.1 216 76.4
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 4.9e-93 345.1 216 76.4
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-92 344.0 216 76.4
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-92 344.0 216 75.0
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.4e-92 343.6 225 72.4
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.9e-92 343.2 213 77.5
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 2.4e-92 342.8 211 79.6
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.2e-92 342.4 216 77.3
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 4.2e-92 342.0 219 77.2
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 7.1e-92 341.3 214 77.6
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.6e-91 340.1 226 72.6
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.6e-91 340.1 215 75.3
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.7e-91 339.3 215 76.3
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 4.6e-91 338.6 212 77.4
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 7.8e-91 337.8 212 78.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.0e-90 337.4 213 75.6
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.0e-90 337.4 215 75.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.0e-90 337.4 215 75.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.7e-90 336.7 219 74.9
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.7e-90 336.7 212 77.4
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 3.0e-90 335.9 214 75.2
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 3.9e-90 335.5 219 78.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 3.9e-90 335.5 219 78.1
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-89 334.0 220 75.0
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-89 333.6 217 77.0
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.5e-89 333.6 217 77.4
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.9e-89 333.2 212 77.4
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.5e-89 332.8 213 76.1
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 4.3e-89 332.0 217 77.0
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 5.6e-89 331.6 217 77.0
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 5.6e-89 331.6 209 75.6
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.3e-89 331.3 218 74.8
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 7.3e-89 331.3 221 72.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.6e-88 330.1 211 74.4
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.6e-88 328.9 227 73.1
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 3.6e-88 328.9 220 74.1
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 3.6e-88 328.9 211 76.8
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 4.8e-88 328.6 213 72.8
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 8.1e-88 327.8 213 74.6
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.8e-87 326.6 267 65.9
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.4e-87 326.2 211 76.8
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 3.1e-87 325.9 210 77.6
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.1e-87 325.9 211 76.3
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.2e-86 323.9 210 77.1
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.5e-86 323.6 249 67.9
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.4e-86 322.0 212 74.5
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 5.8e-86 321.6 212 74.1
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 7.6e-86 321.2 216 73.6
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.9e-85 318.5 217 71.0
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 6.4e-85 318.2 226 71.7
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 6.4e-85 318.2 211 75.4
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 6.4e-85 318.2 213 73.7
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 8.4e-85 317.8 208 74.0
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 7.1e-84 314.7 211 70.6
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.6e-83 313.5 231 68.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.1e-83 313.2 216 71.8
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.1e-83 313.2 211 73.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 3.5e-83 312.4 228 69.3
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.7e-82 310.1 194 79.4
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.9e-82 308.9 217 70.5
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.4e-81 304.7 217 68.7
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.6e-80 303.5 214 70.6
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.1e-80 303.1 231 66.2
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 6.2e-80 301.6 217 68.2
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.4e-79 299.7 216 65.7
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 9.0e-79 297.7 216 64.8
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 9.0e-79 297.7 216 64.8
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 2.0e-78 296.6 216 64.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-78 296.6 216 64.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 2.0e-78 296.6 216 64.4
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.2e-77 293.1 196 74.5
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.9e-77 292.7 218 69.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.4e-77 291.6 177 79.7
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.2e-76 289.3 223 66.4
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 9.3e-76 287.7 173 80.9
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 2.5e-68 263.1 245 60.4
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.2e-68 262.7 338 49.7
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.2e-68 262.7 199 65.3
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.4e-63 247.3 236 58.5
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-62 244.2 225 55.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.2e-61 240.0 216 56.9
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.2e-59 234.2 137 84.7
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 3.6e-59 232.6 137 83.9
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 6.1e-59 231.9 224 54.5
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 3.7e-56 222.6 135 83.0
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-54 217.6 215 54.0
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 5.7e-49 198.7 212 50.9
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.6e-46 189.9 215 47.0
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-39 167.9 177 54.2
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.8e-39 167.2 170 50.0
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.5e-38 162.5 137 59.9
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 9.4e-28 128.3 76 81.6
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.4e-26 124.4 113 57.5
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.2e-20 102.1 60 75.0
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 3.5e-14 83.2 89 47.2
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 1.0e-10 71.6 63 57.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.0e-10 71.6 68 50.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.4e-10 71.2 76 51.3
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 5.2e-10 69.3 44 77.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.9e-08 63.5 76 50.0
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.9e-08 62.8 40 72.5


User provided reference genes

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