Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.4e-26 122.1 59 100.0
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.2e-17 92.4 58 70.7
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 4.6e-17 90.5 59 71.2
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 1.0e-16 89.4 59 69.5
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 1.0e-16 89.4 59 69.5
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 1.8e-16 88.6 55 72.7
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.8e-16 88.6 52 73.1
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.3e-16 88.2 58 67.2
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 5.1e-16 87.0 60 70.0
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.1e-16 87.0 60 70.0
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 6.7e-16 86.7 52 71.2
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 8.8e-16 86.3 58 70.7
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.8e-16 86.3 60 70.0
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 8.8e-16 86.3 55 67.3
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.1e-15 85.9 57 66.7
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.1e-15 85.9 57 66.7
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.5e-15 85.5 57 66.7
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 1.9e-15 85.1 62 62.9
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.5e-15 84.7 57 64.9
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.5e-15 84.7 57 64.9
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 4.3e-15 84.0 58 67.2
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 9.7e-15 82.8 62 62.9
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 1.3e-14 82.4 57 59.6
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.7e-14 82.0 58 62.1
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 2.2e-14 81.6 56 64.3
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.2e-14 81.6 56 64.3
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 2.8e-14 81.3 59 62.7
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 6.3e-14 80.1 57 63.2
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.1e-13 79.3 57 57.9
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.1e-13 79.3 54 68.5
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.8e-13 78.6 59 59.3
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 2.4e-13 78.2 58 63.8
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 6.9e-13 76.6 57 59.6
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 6.9e-13 76.6 57 59.6
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 9.1e-13 76.3 55 58.2
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.2e-12 75.9 52 63.5
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 1.2e-12 75.9 59 61.0
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.5e-12 75.5 52 63.5
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.0e-12 75.1 77 53.2
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 2.0e-12 75.1 57 57.9
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 2.6e-12 74.7 56 55.4
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.4e-12 74.3 54 63.0
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 7.7e-12 73.2 49 63.3
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 7.7e-12 73.2 54 61.1
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 1.0e-11 72.8 57 61.4
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.0e-11 72.8 56 60.7
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 1.0e-11 72.8 56 60.7
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.0e-11 72.8 56 60.7
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 1.0e-11 72.8 56 57.1
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.7e-11 72.0 57 57.9
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 2.2e-11 71.6 51 60.8
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 2.2e-11 71.6 51 58.8
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 2.2e-11 71.6 54 53.7
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 3.8e-11 70.9 54 59.3
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 5.0e-11 70.5 58 55.2
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 5.0e-11 70.5 58 55.2
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 5.0e-11 70.5 52 59.6
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 5.0e-11 70.5 52 59.6
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 6.5e-11 70.1 51 58.8
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 8.5e-11 69.7 58 55.2
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 8.5e-11 69.7 58 60.3
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 8.5e-11 69.7 58 60.3
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 8.5e-11 69.7 58 58.6
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.1e-10 69.3 51 60.8
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 1.1e-10 69.3 53 56.6
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.1e-10 69.3 51 56.9
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 1.4e-10 68.9 54 57.4
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.4e-10 68.9 54 61.1
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 1.9e-10 68.6 52 59.6
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 1.9e-10 68.6 52 59.6
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 1.9e-10 68.6 58 55.2
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.5e-10 68.2 72 48.6
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 4.2e-10 67.4 51 54.9
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 7.2e-10 66.6 51 54.9
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.4e-10 66.2 57 56.1
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.6e-09 65.5 51 52.9
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 2.1e-09 65.1 61 52.5
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.7e-09 64.7 94 39.4
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.6e-09 64.3 57 54.4
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 4.7e-09 63.9 39 66.7
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.1e-09 63.5 33 81.8
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 6.1e-09 63.5 37 70.3
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.4e-08 62.4 42 59.5
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.0e-08 61.2 53 58.5
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 3.0e-08 61.2 59 47.5
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 3.9e-08 60.8 43 58.1
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 8.8e-08 59.7 43 55.8
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 8.8e-08 59.7 43 55.8
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 8.8e-08 59.7 51 51.0
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-07 59.3 43 55.8
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 1.1e-07 59.3 43 55.8
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 3.3e-07 57.8 48 56.2
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 3.3e-07 57.8 47 59.6
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 1.3e-06 55.8 38 57.9
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 1.3e-06 55.8 43 60.5
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 1.7e-06 55.5 44 54.5
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 2.8e-06 54.7 41 65.9
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 2.8e-06 54.7 41 63.4
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 4.8e-06 53.9 41 53.7
Ciclev10033060m.g Citrus clementina HOM05D007120 ORTHO05D008881 6.3e-06 53.5 45 51.1
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 8.2e-06 53.1 37 59.5


User provided reference genes

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