Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 2322.7 1217 100.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1698.3 1226 74.6
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1691.4 1156 77.0
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1672.5 1166 75.8
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1657.1 1154 75.9
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1652.9 1230 71.9
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1648.3 1220 72.1
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1644.4 1151 74.7
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1636.7 1255 70.5
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1624.4 1240 70.7
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1622.8 1257 71.3
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1620.1 1222 70.8
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1608.2 1240 70.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1607.0 1220 71.3
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1605.1 1220 71.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1604.0 1237 70.3
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1597.4 1224 70.9
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1597.0 1237 70.0
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1596.6 1224 70.3
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1592.4 1230 70.4
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1592.0 1224 70.3
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1591.6 1227 71.6
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1587.8 1216 70.6
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1583.5 1230 70.0
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1582.8 1198 70.4
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1579.3 1220 70.6
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1575.1 1229 69.2
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1574.7 1222 69.8
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1573.5 1218 68.8
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1571.6 1222 69.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1568.5 1156 71.5
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1566.2 1236 70.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1565.8 1231 68.3
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1560.4 1222 69.5
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1557.0 1229 69.0
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1555.0 1203 69.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1551.2 1235 69.5
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1550.0 1227 69.6
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1548.5 1221 68.3
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1548.5 1223 68.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1543.5 1215 69.0
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1537.3 1224 67.7
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1525.4 1226 66.7
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1524.2 1191 69.0
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1523.8 1202 68.6
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1515.4 1218 67.7
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1511.9 1229 67.2
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1511.9 1229 67.2
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1507.7 1251 66.4
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1501.5 1225 67.2
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1499.6 1204 67.9
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1496.5 1220 67.0
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1493.0 1217 66.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1491.9 1199 67.1
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1491.1 1213 65.9
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1488.8 1204 67.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1488.8 1231 66.5
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1488.4 1217 67.4
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1488.4 1218 66.7
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1485.7 1217 66.9
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1485.7 1193 66.5
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1484.9 1204 67.6
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1484.2 1426 59.7
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1483.4 1214 67.1
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1480.3 1208 67.1
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1478.4 1242 66.1
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1472.2 1218 65.7
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1469.5 1256 65.1
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1469.5 1256 65.1
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1466.1 1242 65.5
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1463.4 1256 64.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1457.2 1183 67.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1450.6 1217 65.7
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1436.8 1177 65.4
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1435.2 1221 65.5
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1430.6 1230 62.9
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1425.2 1144 67.0
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1423.3 1212 63.7
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1421.0 1332 60.9
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1419.8 1235 63.2
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1416.0 1209 65.3
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1403.7 1217 64.6
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1403.7 1223 62.8
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1399.8 1192 64.3
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1392.9 1207 64.3
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1368.6 1157 64.3
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1367.1 1262 61.0
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1365.5 1158 65.9
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1364.7 1247 61.8
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1355.9 1160 65.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1350.1 1234 61.9
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1238.0 1028 65.0
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1228.4 1213 56.9
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1204.1 1182 58.5
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1202.6 1191 58.6
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1199.9 1071 62.0
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1187.2 1208 57.9
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1179.9 1074 60.2
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1171.4 835 75.3
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1147.9 1125 56.5
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1145.2 985 64.3
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1121.7 1184 55.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.0e-299 1033.9 1148 51.8
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.0e-291 1007.3 1242 50.6
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 5.6e-282 974.9 1148 48.9
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.6e-281 973.4 777 69.1
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.2e-276 957.2 680 73.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.2e-276 957.2 745 67.7
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.5e-263 911.4 677 70.8
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 6.8e-256 888.3 945 53.1
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 2.5e-242 843.2 1261 43.2
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 8.7e-227 791.6 1280 40.5
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.5e-226 790.0 638 64.6
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 4.3e-226 789.3 710 63.8
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 6.0e-220 768.8 672 61.8
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 6.3e-209 732.3 690 59.6
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.0e-206 724.9 599 65.9
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.8e-206 723.0 1154 40.8
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 6.1e-204 715.7 618 62.1
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.2e-185 654.1 593 60.2
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.8e-185 653.7 1140 38.3
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.7e-167 594.0 523 60.4
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.7e-159 567.4 456 68.2
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.0e-158 563.1 457 67.0
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 2.3e-147 527.7 431 67.5
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 4.7e-140 503.4 1532 28.9
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.0e-134 485.7 408 68.4
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 2.8e-132 477.6 395 68.1
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 6.7e-110 403.3 300 69.7
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.3e-109 400.6 1136 31.2
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 8.4e-105 386.3 366 60.9
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 4.5e-98 364.0 481 50.9
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 5.0e-97 360.5 421 49.9
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-94 350.5 401 52.1
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.3e-93 347.8 260 71.9
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 6.3e-76 290.4 314 52.9
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 4.7e-71 274.2 262 56.1
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 4.1e-67 261.2 227 61.2
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 5.0e-65 254.2 202 65.8
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.3e-57 228.8 130 90.8
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-54 218.0 210 57.1
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-53 215.3 208 57.2
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.7e-52 212.6 179 58.7
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-52 212.2 208 56.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-52 211.8 204 56.9
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 9.5e-48 196.8 159 62.9
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-47 194.9 177 61.6
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 7.0e-43 180.6 167 59.9
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-39 168.3 134 62.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.1e-38 165.2 130 63.8
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.2e-38 164.5 132 68.2
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 4.4e-37 161.4 130 63.1
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 9.8e-37 160.2 127 63.0
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 3.1e-30 138.7 106 65.1
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-28 132.5 111 60.4
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-27 129.8 132 52.3
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.2e-21 110.2 236 36.4
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.9e-20 104.8 64 79.7
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-19 103.6 179 40.2
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.6e-18 99.8 109 59.6
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.1e-18 99.4 68 70.6
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.7e-18 99.0 109 58.7
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 5.6e-16 91.3 67 71.6
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 6.2e-15 87.8 145 41.4
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.3e-12 80.1 248 27.4
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.2e-12 79.3 78 60.3
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 2.7e-10 72.4 121 35.5
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.3e-08 65.5 65 56.9
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 5.6e-08 64.7 127 37.0
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 1.3e-07 63.5 55 70.9
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 2.1e-07 62.8 135 38.5
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 2.4e-06 59.3 62 59.7
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 4.0e-06 58.5 67 58.2
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 9.0e-06 57.4 62 58.1
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 9.0e-06 57.4 62 58.1


User provided reference genes

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