Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 5.4e-66 254.2 132 100.0
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 1.0e-27 127.1 125 58.4
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 1.0e-27 127.1 125 58.4
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.5e-26 122.5 125 57.6
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 7.2e-26 120.9 125 56.8
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 1.2e-25 120.2 131 55.7
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 3.6e-25 118.6 132 52.3
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 3.9e-24 115.2 125 55.2
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 5.1e-24 114.8 132 54.5
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 1.5e-23 113.2 135 45.9
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 3.3e-23 112.1 138 49.3
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 5.7e-23 111.3 105 55.2
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 9.7e-23 110.5 115 53.0
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 1.7e-22 109.8 112 54.5
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 2.2e-22 109.4 109 53.2
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 2.8e-22 109.0 109 52.3
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.4e-21 106.7 113 50.4
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 2.4e-21 105.9 133 46.6
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 9.1e-21 104.0 106 50.9
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.2e-20 103.6 106 50.9
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.2e-20 103.6 106 50.9
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 2.0e-20 102.8 125 47.2
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 2.0e-20 102.8 124 48.4
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 2.0e-20 102.8 104 51.0
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 2.6e-20 102.4 114 50.0
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 7.7e-20 100.9 110 50.9
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 7.7e-20 100.9 104 50.0
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 7.7e-20 100.9 104 50.0
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 2.9e-19 99.0 136 44.1
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 6.5e-19 97.8 105 47.6
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 8.5e-19 97.4 88 53.4
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 8.5e-19 97.4 88 52.3
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 8.5e-19 97.4 114 45.6
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 1.1e-18 97.1 114 43.9
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 4.2e-18 95.1 103 51.5
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 7.2e-18 94.4 134 39.6
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 2.1e-17 92.8 108 46.3
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 2.7e-17 92.4 101 49.5
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 3.6e-17 92.0 112 45.5
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 3.6e-17 92.0 109 45.0
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 1.0e-16 90.5 96 47.9
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 1.8e-16 89.7 98 51.0
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 2.3e-16 89.4 92 46.7
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 3.0e-16 89.0 110 45.5
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 3.9e-16 88.6 99 48.5
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 6.7e-16 87.8 97 50.5
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 1.1e-15 87.0 108 43.5
QL05p004031 Quercus lobata HOM05D006176 ORTHO05D007346 2.0e-15 86.3 140 43.6
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 2.0e-15 86.3 90 48.9
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 3.3e-15 85.5 99 48.5
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 3.3e-15 85.5 116 43.1
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 5.7e-15 84.7 101 47.5
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 5.7e-15 84.7 102 44.1
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 7.4e-15 84.3 103 43.7
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 9.7e-15 84.0 106 45.3
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 9.7e-15 84.0 101 44.6
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 9.7e-15 84.0 96 49.0
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 2.2e-14 82.8 98 46.9
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 2.8e-14 82.4 103 43.7
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 6.3e-14 81.3 89 44.9
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 8.2e-14 80.9 93 48.4
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 1.8e-13 79.7 87 43.7
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 3.1e-13 79.0 115 40.0
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 5.3e-13 78.2 86 39.5
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 5.3e-13 78.2 100 44.0
Lalb_Chr14g0361931 Lupinus albus HOM05D006176 ORTHO05D007346 7.0e-13 77.8 110 47.3
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 1.6e-12 76.6 101 40.6
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 1.6e-12 76.6 87 43.7
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.0e-12 76.3 90 42.2
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 2.0e-12 76.3 83 44.6
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 2.6e-12 75.9 82 41.5
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 3.5e-12 75.5 99 47.5
Sopen03g041090 Solanum pennellii HOM05D006176 ORTHO05D007346 4.5e-12 75.1 89 44.9
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 1.0e-11 73.9 112 43.8
Psat4g168640 Pisum sativum HOM05D006176 ORTHO05D007346 1.3e-11 73.6 77 45.5
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.2e-11 72.8 87 44.8
PGSC0003DMG400022907 Solanum tuberosum HOM05D006176 ORTHO05D007346 5.0e-11 71.6 91 42.9
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 8.5e-11 70.9 99 40.4
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 1.1e-10 70.5 111 39.6
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 1.9e-10 69.7 92 43.5
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 2.5e-10 69.3 92 42.4
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 3.2e-10 68.9 92 44.6
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 4.2e-10 68.6 99 39.4
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 5.5e-10 68.2 99 43.4
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 5.5e-10 68.2 92 43.5
Nitab4.5_0000189g0110 Nicotiana tabacum HOM05D006176 ORTHO05D007346 5.5e-10 68.2 74 48.6
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 5.5e-10 68.2 92 43.5
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 7.2e-10 67.8 99 44.4
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 9.4e-10 67.4 84 44.0
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 1.2e-09 67.0 93 44.1
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 1.6e-09 66.6 97 42.3
Lsat_1_v5_gn_5_136361 Lactuca sativa HOM05D006176 ORTHO05D007346 1.6e-09 66.6 98 39.8
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 2.1e-09 66.2 92 41.3
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 2.1e-09 66.2 104 43.3
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 3.6e-09 65.5 92 41.3
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 3.6e-09 65.5 89 43.8
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 3.6e-09 65.5 92 41.3
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 6.1e-09 64.7 92 40.2
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 6.1e-09 64.7 92 40.2
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 6.1e-09 64.7 92 40.2
MSTRG.10943 Avicennia marina HOM05D006176 ORTHO05D007346 1.4e-08 63.5 82 39.0
HanXRQChr12g0360401 Helianthus annuus HOM05D006176 ORTHO05D007346 1.8e-08 63.2 69 39.1
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 2.3e-08 62.8 92 41.3
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 3.0e-08 62.4 89 41.6
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 5.2e-08 61.6 86 41.9
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 6.7e-08 61.2 92 40.2
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 6.7e-08 61.2 92 40.2
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 6.7e-08 61.2 92 40.2
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 2.0e-07 59.7 92 39.1
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 2.0e-07 59.7 92 39.1
CDE07G1640 Ceratophyllum demersum HOM05D006176 ORTHO05D007346 3.3e-07 58.9 86 43.0
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 9.7e-07 57.4 109 37.6
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 1.3e-06 57.0 109 34.9
MSTRG.10944 Avicennia marina HOM05D006176 ORTHO05D007346 2.2e-06 56.2 83 39.8
ECA234G1437 Erigeron canadensis HOM05D006176 ORTHO05D007346 2.2e-06 56.2 108 36.1
SalBow6G3428 Salvia bowleyana HOM05D006176 ORTHO05D007346 2.8e-06 55.8 48 41.7


User provided reference genes

Program Settings