Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 5.2e-276 953.7 482 100.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 4.4e-206 721.5 489 74.8
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.7e-205 718.4 492 73.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 8.6e-202 707.2 485 73.4
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.6e-200 703.0 492 73.0
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 3.7e-197 691.8 483 71.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.9e-197 691.4 484 71.3
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.0e-196 687.6 483 71.2
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.0e-195 686.0 484 70.9
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.0e-194 683.7 484 70.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.7e-194 682.9 484 70.7
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.3e-194 682.6 484 69.4
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.9e-194 682.2 485 71.5
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.3e-193 677.6 474 71.3
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 7.3e-193 677.6 482 69.5
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.8e-192 675.6 483 70.2
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.8e-191 672.9 464 71.6
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.8e-191 672.9 489 69.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.3e-189 666.8 466 71.5
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.7e-189 666.4 474 70.0
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.9e-189 665.6 468 70.3
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.9e-189 665.6 484 69.4
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 3.7e-189 665.2 469 71.9
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.9e-188 662.9 469 71.2
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 4.1e-188 661.8 484 69.8
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.6e-187 659.8 468 69.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.7e-187 659.1 483 68.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.5e-187 658.7 469 69.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.6e-187 658.3 483 68.9
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.0e-186 657.1 470 69.6
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.1e-185 653.7 472 68.2
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.3e-185 652.1 483 68.1
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 7.3e-185 651.0 480 67.5
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.8e-184 649.0 469 67.8
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.1e-183 645.6 470 68.1
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.2e-183 644.8 465 68.4
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 6.8e-183 644.4 463 70.0
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 6.8e-183 644.4 463 70.2
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.4e-182 642.1 463 69.5
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.8e-182 640.6 467 69.2
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.8e-182 640.6 463 69.1
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 9.8e-182 640.6 463 69.1
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.3e-181 640.2 467 69.2
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.9e-181 638.3 463 69.5
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.4e-180 636.0 468 67.7
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 4.1e-180 635.2 465 65.8
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 8.6e-178 627.5 484 65.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 8.6e-178 627.5 469 67.8
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.3e-177 625.5 465 68.2
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 7.3e-177 624.4 490 66.5
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 4.7e-176 621.7 465 68.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.3e-175 619.4 492 64.0
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.4e-174 615.1 476 64.1
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 9.9e-174 614.0 477 65.2
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 6.4e-173 611.3 470 64.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 5.1e-170 601.7 469 64.6
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.3e-169 598.6 454 65.9
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 9.5e-169 597.4 463 65.4
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.4e-166 589.0 467 64.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.9e-164 583.2 469 61.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 6.0e-163 578.2 467 62.5
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.0e-162 577.4 466 61.6
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.5e-161 573.5 485 61.6
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.4e-159 567.0 464 62.7
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.6e-158 562.8 481 58.2
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 6.4e-157 558.1 464 62.3
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.4e-157 558.1 463 61.6
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 6.4e-157 558.1 488 60.2
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 3.2e-156 555.8 477 62.1
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 7.1e-156 554.7 464 61.0
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 9.3e-156 554.3 469 58.4
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.3e-154 550.4 464 60.8
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.9e-154 548.9 477 60.0
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.6e-154 548.1 473 59.6
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.3e-152 543.9 450 60.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.6e-152 542.3 468 59.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 6.9e-151 538.1 472 62.3
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 9.0e-151 537.7 470 60.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.2e-150 537.3 463 59.8
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 9.9e-150 534.3 465 59.4
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.3e-149 533.9 462 58.9
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.9e-149 531.9 472 58.5
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.2e-148 529.3 477 58.1
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 3.5e-147 525.8 463 57.2
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.8e-146 523.5 473 57.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.3e-145 518.8 467 58.9
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.6e-142 508.1 466 57.5
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 6.4e-141 505.0 463 56.8
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-139 500.4 463 55.7
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.7e-139 499.6 468 56.0
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 3.5e-139 499.2 463 56.4
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 6.0e-139 498.4 463 56.4
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 7.9e-139 498.0 464 55.8
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.0e-138 497.7 469 55.4
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.8e-138 496.9 463 54.6
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-138 496.5 463 56.6
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.3e-138 496.5 469 56.1
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.3e-137 492.7 463 54.2
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.8e-136 488.8 464 53.7
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 6.2e-136 488.4 464 54.5
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 8.2e-136 488.0 474 53.8
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 8.2e-136 488.0 409 60.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.4e-135 487.3 464 53.0
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.4e-135 487.3 468 54.1
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.0e-135 485.7 465 53.3
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 4.0e-135 485.7 391 59.1
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 6.9e-135 485.0 476 53.2
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.3e-133 480.7 467 54.8
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.7e-133 480.3 468 53.4
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.7e-133 480.3 466 52.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.9e-133 479.6 464 54.1
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 6.5e-133 478.4 465 54.0
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.5e-132 475.3 469 53.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 9.3e-132 474.6 469 53.5
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 6.1e-131 471.9 473 51.6
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 7.9e-131 471.5 454 55.5
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.0e-130 471.1 468 53.2
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.8e-130 470.3 458 53.7
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-129 467.6 465 52.0
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.1e-129 467.6 464 53.4
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-129 466.8 465 52.7
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.9e-129 466.8 466 52.6
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.5e-129 466.5 465 53.8
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 5.7e-129 465.3 465 52.5
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.8e-128 463.0 465 51.8
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 4.8e-128 462.2 467 51.8
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 6.3e-128 461.8 452 52.2
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-127 460.3 465 52.3
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-127 460.3 465 52.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.0e-126 456.8 463 52.5
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-126 456.1 464 53.0
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.4e-126 456.1 464 52.8
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.4e-126 456.1 464 53.0
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 7.7e-126 454.9 464 50.6
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 7.7e-126 454.9 464 50.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.9e-125 453.0 464 52.6
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 6.5e-125 451.8 350 65.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 6.5e-125 451.8 350 65.1
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.1e-124 451.1 464 51.3
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-123 447.6 464 50.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-123 446.8 464 51.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.1e-123 446.8 464 49.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 3.0e-122 443.0 463 50.1
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 6.9e-119 431.8 456 51.3
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.5e-118 430.6 429 52.4
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.3e-113 412.9 428 50.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.7e-104 384.0 437 46.9
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.1e-99 367.1 483 43.5
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-98 364.4 490 43.1
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.4e-97 359.8 460 44.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.5e-97 358.6 484 43.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 6.5e-93 345.5 464 45.3
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.4e-89 332.8 455 41.1
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 8.6e-85 318.5 467 43.5
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.8e-83 313.5 325 54.8
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.3e-74 283.9 206 68.9
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.4e-71 273.9 368 41.8
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.7e-62 243.8 206 57.8
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-61 241.5 198 59.1
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-61 241.1 198 59.1
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 6.4e-56 222.6 221 55.7
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.2e-51 206.1 209 53.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 6.4e-48 196.1 160 62.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.9e-40 170.6 329 35.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 5.1e-29 133.3 128 49.2
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-25 121.7 287 34.5
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 6.2e-19 99.8 118 49.2
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 5.0e-16 90.1 83 56.6
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 9.3e-15 85.9 167 36.5
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 4.6e-14 83.6 85 54.1
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.9e-12 78.2 114 39.5
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.4e-07 59.3 49 53.1
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 1.6e-06 58.5 64 53.1


User provided reference genes

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