Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 5.9e-153 544.3 294 100.0
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.3e-104 383.6 303 71.0
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.2e-99 366.3 303 69.0
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 3.2e-98 362.5 301 66.4
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 5.4e-98 361.7 303 68.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 2.7e-97 359.4 300 69.0
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.9e-97 358.2 338 62.1
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.3e-96 357.1 300 67.0
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.3e-96 357.1 300 67.0
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 5.0e-96 355.1 326 62.6
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.6e-95 351.7 338 61.5
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.6e-95 351.7 300 67.3
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 7.3e-95 351.3 303 65.3
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.2e-94 350.5 302 64.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.1e-94 349.7 305 65.9
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 2.1e-94 349.7 337 61.7
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 4.7e-94 348.6 305 64.6
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.8e-93 346.7 304 62.8
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.3e-93 346.3 333 60.4
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 2.3e-93 346.3 335 62.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.0e-93 345.5 323 62.5
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 4.0e-93 345.5 302 64.9
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.5e-92 343.6 302 63.9
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.4e-92 342.4 333 60.4
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 4.4e-92 342.0 305 62.6
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 9.8e-92 340.9 229 79.9
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-90 337.0 332 59.6
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.4e-90 336.3 317 62.1
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 4.1e-90 335.5 316 60.8
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.1e-90 335.5 332 59.6
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 9.2e-90 334.3 240 75.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 9.2e-90 334.3 334 60.8
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.2e-89 334.0 236 74.6
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 4.6e-89 332.0 340 59.4
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-88 330.5 229 77.3
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.3e-88 329.7 305 61.6
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 3.0e-88 329.3 252 71.0
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.0e-88 329.3 302 62.6
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.0e-88 329.3 229 76.9
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.0e-88 329.3 257 68.1
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.0e-88 329.3 302 62.3
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.9e-88 328.9 240 75.0
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 3.9e-88 328.9 229 76.4
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 6.6e-88 328.2 248 71.8
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.3e-87 325.9 335 57.9
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.3e-87 325.9 222 77.9
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 7.3e-87 324.7 222 77.5
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.5e-87 324.3 222 77.5
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.1e-86 323.2 302 62.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.1e-86 323.2 301 62.1
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.8e-85 320.1 222 77.0
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 2.3e-85 319.7 211 78.7
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.3e-85 319.7 226 75.7
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.1e-85 319.3 278 65.5
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 3.1e-85 319.3 226 75.2
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.1e-85 319.3 269 66.9
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 3.1e-85 319.3 231 74.9
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 3.1e-85 319.3 271 65.7
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.0e-85 318.9 286 62.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 6.8e-85 318.2 227 74.4
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 8.9e-85 317.8 221 77.8
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.9e-85 317.8 274 66.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.2e-84 317.4 228 73.2
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-84 317.4 222 75.7
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.5e-84 317.0 218 77.1
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.5e-84 317.0 296 63.2
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.0e-84 316.6 229 72.9
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.6e-84 316.2 266 66.2
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.6e-84 316.2 296 62.8
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 7.5e-84 314.7 271 64.9
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 2.2e-83 313.2 226 74.3
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 6.4e-83 311.6 219 74.9
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 6.4e-83 311.6 211 79.1
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 8.3e-83 311.2 333 57.1
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.4e-82 310.5 254 68.9
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.4e-82 310.5 243 68.7
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.9e-82 310.1 222 73.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.4e-82 309.7 255 67.8
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 2.4e-82 309.7 241 69.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 3.2e-82 309.3 231 71.4
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.1e-82 308.9 219 74.4
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 5.4e-82 308.5 231 72.7
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 9.2e-82 307.8 219 74.4
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 9.2e-82 307.8 226 72.6
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.2e-81 307.4 220 75.5
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.6e-81 307.0 245 67.8
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.6e-81 307.0 225 73.8
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.1e-81 306.6 234 71.8
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.7e-81 306.2 230 71.3
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 4.6e-81 305.4 303 60.7
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 6.0e-81 305.1 231 70.6
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 6.0e-81 305.1 220 75.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.0e-80 304.3 231 71.4
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.0e-80 304.3 270 64.1
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.3e-80 303.9 225 73.8
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 3.0e-80 302.8 265 65.3
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.0e-80 302.8 253 66.0
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.0e-80 302.8 253 66.0
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 3.0e-80 302.8 277 62.1
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.1e-79 300.8 227 71.4
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 2.5e-79 299.7 436 47.9
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 3.3e-79 299.3 233 69.5
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 4.3e-79 298.9 233 70.0
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 4.3e-79 298.9 233 70.4
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 4.3e-79 298.9 298 61.7
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.2e-78 297.4 233 69.1
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.2e-78 297.4 233 69.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.1e-78 296.6 232 69.4
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 2.8e-78 296.2 232 69.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 3.6e-78 295.8 227 73.6
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.6e-78 295.8 302 57.9
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.1e-77 294.3 232 69.4
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.1e-77 294.3 228 68.9
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.4e-77 293.9 228 68.9
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-76 290.0 218 70.6
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-76 290.0 209 71.8
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.9e-75 286.2 312 54.2
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.9e-75 286.2 223 68.2
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 4.1e-74 282.3 301 57.8
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 9.2e-74 281.2 271 60.9
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 8.6e-72 274.6 208 67.8
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 6.2e-70 268.5 253 60.1
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 8.1e-70 268.1 177 76.8
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 9.9e-68 261.2 177 79.1
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.0e-65 251.9 169 78.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.5e-63 247.3 233 60.1
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-62 244.2 190 70.5
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.6e-62 243.8 242 62.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.1e-62 241.5 166 77.1
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.4e-61 240.0 271 54.2
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 3.1e-61 239.6 200 68.5
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.2e-60 237.7 204 66.7
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.7e-59 233.8 271 54.6
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.8e-59 232.6 195 67.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 6.4e-59 231.9 298 49.3
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 7.1e-58 228.4 209 59.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 7.1e-58 228.4 209 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.8e-56 223.8 190 64.2
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.7e-56 221.5 190 67.9
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.8e-54 215.7 173 69.4
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.1e-53 214.5 169 66.3
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 2.0e-52 210.3 201 57.7
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 8.4e-51 204.9 196 55.1
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 5.1e-48 195.7 186 57.5
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 9.6e-47 191.4 166 63.3
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.5e-44 184.1 236 48.3
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.8e-40 170.6 157 58.6
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.0e-27 128.3 343 32.1
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 1.6e-25 120.9 337 31.8
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.8e-24 117.5 68 83.8
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 7.2e-18 95.5 195 32.3
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.1e-17 94.0 209 34.4
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.6e-15 87.0 236 30.9
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.2e-12 78.2 256 30.1
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 8.5e-11 72.0 42 78.6
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.1e-10 71.6 46 80.4
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.5e-10 69.3 41 75.6
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 4.7e-09 66.2 68 57.4
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 1.0e-08 65.1 56 58.9
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.7e-06 57.8 181 27.6


User provided reference genes

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