Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 2.2e-136 489.2 289 100.0
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 8.6e-133 477.2 290 99.0
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 5.5e-95 351.7 281 64.4
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 2.3e-93 346.3 286 68.2
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 8.7e-93 344.4 285 61.8
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 4.3e-92 342.0 286 63.3
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 1.3e-91 340.5 283 62.5
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.3e-91 340.5 281 71.9
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.3e-91 340.5 281 74.0
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 1.1e-90 337.4 282 63.5
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 1.1e-90 337.4 285 61.4
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 4.1e-90 335.5 282 74.8
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 5.3e-90 335.1 286 62.6
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 2.2e-88 329.7 289 59.5
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 2.2e-88 329.7 285 62.1
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 2.9e-88 329.3 287 61.7
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 3.8e-88 328.9 288 61.1
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 5.0e-88 328.6 284 69.7
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 8.5e-88 327.8 290 60.3
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 1.1e-87 327.4 279 61.6
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.4e-87 327.0 282 61.0
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 1.4e-87 327.0 282 61.0
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 3.2e-87 325.9 281 70.5
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.2e-87 325.9 281 70.5
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 4.2e-87 325.5 286 61.2
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 3.6e-86 322.4 287 59.6
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 2.3e-85 319.7 287 61.7
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 3.0e-85 319.3 281 72.2
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.5e-84 317.0 282 59.6
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 2.0e-84 316.6 279 60.6
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 2.0e-84 316.6 286 58.0
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 9.7e-84 314.3 281 58.7
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 9.7e-84 314.3 283 57.2
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 2.8e-83 312.8 281 60.5
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 2.8e-83 312.8 287 60.3
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 8.2e-83 311.2 286 57.3
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 1.8e-82 310.1 281 57.3
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 5.3e-82 308.5 279 57.7
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 9.1e-82 307.8 284 57.0
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 1.2e-81 307.4 283 57.6
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 2.6e-81 306.2 289 56.7
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 4.5e-81 305.4 282 57.4
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 1.0e-80 304.3 280 57.9
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 1.0e-80 304.3 280 57.9
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 5.0e-80 302.0 281 57.3
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 6.5e-80 301.6 283 61.1
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 2.5e-79 299.7 287 56.4
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 3.2e-79 299.3 281 59.1
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 4.2e-79 298.9 280 65.4
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 4.2e-79 298.9 282 63.5
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 2.7e-78 296.2 284 54.2
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 2.7e-78 296.2 282 63.1
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 1.1e-76 290.8 286 62.6
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 7.4e-76 288.1 282 71.3
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 4.8e-75 285.4 298 53.7
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 8.2e-75 284.6 281 65.5
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 5.3e-74 282.0 279 54.8
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 1.2e-73 280.8 284 54.9
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 5.9e-73 278.5 286 53.1
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 1.3e-72 277.3 281 52.7
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 3.8e-72 275.8 283 51.9
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 5.0e-72 275.4 286 54.9
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 8.5e-72 274.6 261 59.8
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 3.2e-71 272.7 287 51.6
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 2.7e-70 269.6 280 52.5
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 6.1e-70 268.5 285 56.8
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 1.0e-69 267.7 299 48.5
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 2.3e-69 266.5 283 55.8
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 3.3e-68 262.7 280 51.4
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 2.8e-67 259.6 289 64.0
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 2.0e-65 253.4 266 51.9
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.3e-64 250.8 281 61.2
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.5e-64 248.4 281 55.2
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 1.5e-63 247.3 280 49.3
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 2.5e-63 246.5 257 53.3
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 8.0e-62 241.5 236 56.8
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 8.8e-61 238.0 249 53.8
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 5.7e-60 235.3 283 45.9
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 2.4e-58 229.9 234 56.8
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 5.3e-58 228.8 254 52.0
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 7.0e-58 228.4 295 50.8
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 5.9e-57 225.3 275 48.7
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 2.7e-54 216.5 236 51.3
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 6.1e-54 215.3 240 49.2
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 1.4e-53 214.2 239 50.6
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 2.1e-46 190.3 285 51.2
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 3.0e-45 186.4 235 47.2
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 1.5e-44 184.1 296 44.3
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 4.9e-43 179.1 116 75.0
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 1.0e-40 171.4 209 45.9
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 1.3e-40 171.0 122 67.2
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 1.5e-39 167.5 122 66.4
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 9.5e-39 164.9 203 48.8
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 1.2e-38 164.5 205 47.3
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 2.8e-38 163.3 120 67.5
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 4.7e-38 162.5 176 51.7
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 4.7e-38 162.5 180 51.1
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 8.0e-38 161.8 203 47.3
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 8.0e-38 161.8 289 35.3
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 8.0e-38 161.8 215 60.0
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 1.8e-37 160.6 167 53.3
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 1.8e-37 160.6 167 52.7
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 1.8e-37 160.6 220 45.0
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 3.1e-37 159.8 231 54.1
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 5.2e-37 159.1 271 39.5
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 6.8e-37 158.7 203 46.8
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 6.8e-37 158.7 122 61.5
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.2e-33 147.9 212 43.4
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 1.2e-33 147.9 100 72.0
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 3.5e-33 146.4 95 73.7
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 3.0e-32 143.3 66 95.5
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 1.6e-30 137.5 226 38.5
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 6.8e-29 132.1 140 50.7
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 5.4e-26 122.5 207 48.8
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 3.5e-17 93.2 87 57.5
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 7.8e-17 92.0 217 34.1
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 1.5e-15 87.8 75 62.7
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 1.5e-15 87.8 103 47.6
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 2.8e-14 83.6 55 74.5
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 1.3e-08 64.7 78 44.9
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 4.3e-07 59.7 99 34.3
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 5.6e-07 59.3 95 34.7
Cpa.g.sc442.1 Carica papaya HOM05D000088 ORTHO05D003056 1.6e-06 57.8 99 35.4
MELO3C002689.2 Cucumis melo HOM05D000088 ORTHO05D003056 1.6e-06 57.8 82 41.5
ClCG03G007320 Citrullus lanatus HOM05D000088 ORTHO05D003056 2.8e-06 57.0 82 40.2
Mapoly0031s0140 Marchantia polymorpha HOM05D000903 ORTHO05D000731 2.8e-06 57.0 100 35.0
TWI09G1601 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 2.8e-06 57.0 124 31.5
Ca_00492_v3 Cicer arietinum L. HOM05D000088 ORTHO05D003056 6.2e-06 55.8 92 34.8
Sed0009859 Sechium edule HOM05D000088 ORTHO05D003056 8.1e-06 55.5 82 39.0


User provided reference genes

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