Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 2.5e-81 305.4 161 100.0
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.3e-77 293.1 155 100.0
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 6.4e-77 290.8 155 99.4
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 8.6e-66 253.8 155 84.5
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.6e-64 248.4 155 82.6
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.8e-63 246.1 155 83.9
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.8e-63 246.1 155 81.9
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 6.9e-63 244.2 155 82.6
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 9.0e-63 243.8 155 82.6
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 1.2e-62 243.4 155 81.3
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 3.4e-62 241.9 155 81.3
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.3e-61 240.0 155 80.0
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 3.8e-61 238.4 155 78.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 6.4e-61 237.7 155 79.4
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 6.4e-61 237.7 155 79.4
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 6.4e-61 237.7 155 78.7
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.1e-60 236.9 155 79.4
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 1.1e-60 236.9 155 78.7
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.4e-60 236.5 155 80.0
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.4e-60 236.5 155 79.4
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.4e-60 236.5 155 78.7
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.4e-60 236.5 155 79.4
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.9e-60 236.1 155 78.7
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.2e-60 235.0 155 79.4
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 5.4e-60 234.6 155 79.4
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 5.4e-60 234.6 155 78.7
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 7.1e-60 234.2 155 79.4
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 1.2e-59 233.4 155 78.1
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.6e-59 233.0 155 77.4
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 2.1e-59 232.6 155 77.4
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.1e-59 232.6 155 78.7
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.1e-59 232.6 155 78.7
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 6.0e-59 231.1 155 79.4
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 7.8e-59 230.7 155 77.4
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 7.8e-59 230.7 155 76.8
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 7.8e-59 230.7 155 76.8
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 3.0e-58 228.8 155 77.4
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 3.0e-58 228.8 155 78.1
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 3.9e-58 228.4 155 76.1
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 3.9e-58 228.4 155 74.2
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 6.6e-58 227.6 155 76.1
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 6.6e-58 227.6 155 73.5
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.5e-57 226.5 155 78.1
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 1.5e-57 226.5 155 78.1
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.9e-57 226.1 157 76.4
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.5e-57 225.7 155 77.4
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 2.5e-57 225.7 155 77.4
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 3.3e-57 225.3 158 78.5
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 9.6e-57 223.8 155 72.3
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 9.6e-57 223.8 155 72.3
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 9.6e-57 223.8 155 72.3
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 9.6e-57 223.8 155 72.3
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 9.6e-57 223.8 155 72.3
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 2.8e-56 222.2 155 76.1
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 3.6e-56 221.9 155 76.8
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 4.8e-56 221.5 155 75.5
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 4.8e-56 221.5 155 72.3
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 6.2e-56 221.1 155 72.9
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 8.1e-56 220.7 155 74.2
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 8.1e-56 220.7 155 75.5
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.1e-55 220.3 155 71.6
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 1.1e-55 220.3 155 76.1
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.8e-55 219.5 155 71.6
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 5.3e-55 218.0 155 71.6
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 6.9e-55 217.6 155 76.1
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 6.9e-55 217.6 155 72.9
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 9.0e-55 217.2 155 71.6
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.5e-54 216.5 155 70.3
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.5e-54 216.5 155 70.3
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 2.0e-54 216.1 155 72.3
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 4.5e-54 214.9 155 76.1
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 9.9e-54 213.8 155 71.6
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 1.7e-53 213.0 155 71.0
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 2.2e-53 212.6 157 72.0
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.1e-52 210.3 155 69.7
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 1.9e-52 209.5 155 70.3
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.4e-52 208.0 192 63.5
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 5.4e-52 208.0 155 68.4
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 9.3e-52 207.2 206 60.7
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 2.1e-51 206.1 155 69.0
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 4.6e-51 204.9 158 68.4
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 6.0e-51 204.5 155 67.7
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 1.8e-50 203.0 159 67.3
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 2.3e-50 202.6 153 71.2
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 3.0e-50 202.2 155 69.7
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 3.9e-50 201.8 138 79.7
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 5.1e-50 201.4 158 66.5
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 6.7e-50 201.1 155 67.1
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 1.1e-49 200.3 155 67.1
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.3e-49 198.7 159 67.9
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 3.3e-49 198.7 155 66.5
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.1e-47 193.7 153 70.6
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.1e-47 193.7 153 70.6
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.8e-47 193.0 196 56.6
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.2e-46 190.3 148 69.6
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 1.5e-46 189.9 155 69.0
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 7.6e-46 187.6 154 68.2
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 9.9e-46 187.2 154 69.5
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 9.9e-46 187.2 155 62.6
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 6.4e-45 184.5 155 65.2
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.3e-42 176.8 158 66.5
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.9e-41 172.9 155 58.7
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 2.5e-41 172.6 155 60.0
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 5.6e-41 171.4 183 54.6
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 1.6e-40 169.9 114 80.7
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 3.4e-38 162.2 155 61.3
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 3.8e-37 158.7 157 51.6
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 3.5e-35 152.1 130 64.6
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 2.2e-32 142.9 156 50.6
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.2e-30 137.1 160 51.9
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.0e-30 136.3 152 49.3
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.5e-30 135.2 154 52.6
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 3.8e-29 132.1 159 50.3
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 5.0e-29 131.7 126 59.5
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 2.5e-28 129.4 166 45.2
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.1e-26 121.7 171 42.7
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 1.1e-25 120.6 114 64.0
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.9e-23 111.3 152 45.4
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.5e-22 108.6 152 44.1
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 8.5e-21 104.4 164 39.6
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 9.4e-20 100.9 152 40.1
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.8e-18 96.7 147 40.1
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.1e-17 94.0 51 90.2
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.3e-16 90.5 97 58.8
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 6.3e-16 88.2 119 46.2
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 6.3e-16 88.2 118 48.3
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 2.4e-15 86.3 74 63.5
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 4.1e-15 85.5 173 33.5
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 5.3e-15 85.1 65 64.6
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.2e-14 84.0 159 30.2
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 6.1e-11 71.6 87 46.0
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.4e-09 64.7 63 44.4
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-08 63.5 99 39.4
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 4.8e-08 62.0 74 55.4
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 4.8e-08 62.0 48 66.7


User provided reference genes

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