Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.6e-43 179.1 96 100.0
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 3.1e-26 121.7 102 62.7
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 7.5e-25 117.1 98 61.2
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 6.4e-24 114.0 98 66.3
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 9.2e-23 110.2 101 59.4
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.2e-22 109.8 97 62.9
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 4.6e-22 107.8 101 59.4
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 3.9e-21 104.8 100 58.0
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 3.9e-21 104.8 96 59.4
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 8.6e-21 103.6 96 59.4
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 1.5e-20 102.8 96 63.5
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 3.3e-20 101.7 106 54.7
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 4.3e-20 101.3 100 57.0
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 7.3e-20 100.5 98 59.2
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 9.5e-20 100.1 104 55.8
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 9.5e-20 100.1 98 58.2
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 1.2e-19 99.8 93 58.1
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.2e-19 99.8 100 56.0
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 1.2e-19 99.8 96 61.5
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.6e-19 99.4 102 53.9
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 1.6e-19 99.4 106 53.8
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 2.1e-19 99.0 96 59.4
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 2.8e-19 98.6 96 58.3
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 3.6e-19 98.2 98 58.2
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 3.6e-19 98.2 96 60.4
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 4.7e-19 97.8 96 56.2
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 6.2e-19 97.4 103 58.3
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 6.2e-19 97.4 106 60.4
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 6.2e-19 97.4 97 59.8
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.1e-18 96.7 80 70.0
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.4e-18 96.3 102 52.9
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.4e-18 96.3 98 57.1
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.4e-18 96.3 100 54.0
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 2.3e-18 95.5 101 56.4
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 4.0e-18 94.7 105 52.4
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 8.9e-18 93.6 106 50.9
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 8.9e-18 93.6 106 50.9
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 8.9e-18 93.6 99 55.6
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.2e-17 93.2 102 52.0
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 1.2e-17 93.2 109 49.5
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.5e-17 92.8 105 54.3
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 2.0e-17 92.4 101 54.5
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 2.6e-17 92.0 96 54.2
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 4.4e-17 91.3 94 57.4
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 4.4e-17 91.3 97 51.5
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 5.8e-17 90.9 102 52.0
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 5.8e-17 90.9 107 48.6
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.8e-17 90.9 107 48.6
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 7.6e-17 90.5 107 48.6
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 1.7e-16 89.4 112 51.8
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 1.7e-16 89.4 78 65.4
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 2.2e-16 89.0 96 51.0
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 3.7e-16 88.2 102 52.0
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 3.7e-16 88.2 72 65.3
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 4.9e-16 87.8 104 50.0
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 4.9e-16 87.8 97 56.7
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 1.4e-15 86.3 106 52.8
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 2.4e-15 85.5 59 67.8
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 3.2e-15 85.1 101 48.5
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 5.4e-15 84.3 105 53.3
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 5.4e-15 84.3 79 58.2
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.1e-15 84.0 96 49.0
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 9.2e-15 83.6 96 52.1
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 9.2e-15 83.6 77 61.0
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 1.2e-14 83.2 107 53.3
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.2e-14 83.2 96 49.0
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 6.0e-14 80.9 103 49.5
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 3.0e-13 78.6 52 76.9
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 3.9e-13 78.2 104 47.1
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 6.6e-13 77.4 102 43.1
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 6.6e-13 77.4 102 43.1
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 6.6e-13 77.4 67 59.7
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 6.6e-13 77.4 55 69.1
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 8.6e-13 77.0 45 75.6
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.5e-12 76.3 64 59.4
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 4.3e-12 74.7 111 45.9
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 4.3e-12 74.7 60 61.7
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 5.6e-12 74.3 60 65.0
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.2e-11 73.2 60 63.3
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.2e-11 73.2 60 63.3
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.1e-11 72.4 107 45.8
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 2.1e-11 72.4 49 71.4
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 2.8e-11 72.0 105 44.8
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 3.6e-11 71.6 93 48.4
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.4e-10 69.7 53 58.5
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 4.0e-10 68.2 49 69.4
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 6.8e-10 67.4 78 47.4
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 4.4e-09 64.7 83 43.4
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 4.4e-09 64.7 83 43.4
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 7.6e-09 63.9 41 65.9
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 9.9e-09 63.5 48 60.4
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 9.9e-09 63.5 39 69.2
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.9e-08 62.0 49 59.2
Gohir.D13G071750 Gossypium hirsutum HOM05D061539 ORTHO05D009484 6.0e-06 54.3 95 37.9


User provided reference genes

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