Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 4.7e-260 900.6 429 100.0
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 3.1e-195 685.3 422 77.7
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.5e-194 682.9 424 77.8
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.2e-192 675.2 425 76.9
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 1.8e-190 669.5 412 78.2
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.5e-189 666.4 410 77.6
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 7.4e-189 664.1 426 75.6
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 2.8e-188 662.1 434 73.7
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 1.3e-185 653.3 417 74.8
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 2.2e-185 652.5 382 79.8
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.0e-185 651.4 407 76.9
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 3.2e-184 648.7 407 76.7
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 9.4e-184 647.1 407 76.4
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.6e-183 646.4 423 74.2
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.1e-183 646.0 427 71.9
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 3.0e-182 642.1 413 74.8
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 6.7e-182 641.0 432 74.1
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 2.5e-181 639.0 411 74.7
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 7.4e-181 637.5 415 72.5
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 2.8e-180 635.6 405 75.3
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.7e-180 635.2 404 73.8
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 2.4e-179 632.5 406 73.6
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 9.1e-179 630.6 391 75.2
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 2.6e-178 629.0 387 76.7
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.5e-178 628.2 439 71.8
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 5.9e-178 627.9 430 72.3
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 3.8e-177 625.2 427 70.5
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 5.0e-177 624.8 432 70.1
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.9e-176 622.9 402 73.4
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.5e-176 622.5 414 72.9
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 2.5e-176 622.5 387 75.5
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.2e-176 621.7 389 77.6
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 5.5e-176 621.3 402 71.6
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 2.7e-175 619.0 399 72.7
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.1e-175 617.8 384 75.0
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 7.9e-175 617.5 421 70.5
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.0e-174 617.1 406 72.2
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.3e-174 615.9 402 71.4
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 3.0e-174 615.5 375 76.0
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 3.9e-174 615.1 427 69.1
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 5.1e-174 614.8 415 71.1
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 6.7e-174 614.4 428 69.4
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 6.7e-174 614.4 423 69.0
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 2.0e-173 612.8 402 70.6
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 5.7e-173 611.3 463 66.7
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 9.7e-173 610.5 405 70.4
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 9.7e-173 610.5 385 74.3
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.3e-172 610.1 431 68.7
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.3e-172 610.1 401 72.8
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.2e-172 609.4 426 68.5
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 2.2e-172 609.4 415 69.9
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 2.8e-172 609.0 401 70.3
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 6.3e-172 607.8 398 71.6
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 6.3e-172 607.8 398 71.6
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.1e-171 607.1 418 70.3
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.4e-171 606.7 457 66.3
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.8e-171 606.3 402 70.6
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.1e-171 605.5 437 69.8
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 4.1e-171 605.1 388 73.5
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 5.3e-171 604.7 397 72.5
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 7.7e-170 600.9 386 72.8
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 1.7e-169 599.7 433 68.8
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.2e-169 599.4 374 75.4
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 5.0e-169 598.2 400 70.2
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 1.1e-168 597.0 401 70.1
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 4.2e-168 595.1 403 71.5
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 4.2e-168 595.1 389 71.5
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 5.5e-168 594.7 393 71.8
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 5.5e-168 594.7 407 70.0
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 7.2e-168 594.3 429 66.7
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.8e-166 589.7 376 73.1
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.5e-165 586.6 402 69.7
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.6e-165 585.9 371 72.8
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 4.4e-165 585.1 421 66.7
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 9.7e-165 583.9 408 68.6
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 4.8e-164 581.6 394 70.1
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 8.2e-164 580.9 403 68.2
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.7e-161 573.2 390 69.5
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.1e-160 570.5 406 66.7
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.1e-160 570.5 379 71.0
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 1.9e-160 569.7 365 76.7
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 2.7e-159 565.8 411 69.1
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 6.1e-151 538.1 402 63.7
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 4.0e-150 535.4 355 70.7
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.2e-149 533.9 424 62.7
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 2.2e-148 529.6 385 66.5
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 9.5e-144 514.2 418 62.2
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 4.9e-140 501.9 405 62.5
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 4.3e-136 488.8 425 57.2
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 2.0e-133 479.9 383 58.0
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 3.4e-133 479.2 338 67.2
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 7.5e-133 478.0 378 61.6
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 8.3e-132 474.6 381 61.7
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 8.6e-129 464.5 346 65.6
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.5e-128 463.0 324 70.4
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 7.5e-125 451.4 285 75.4
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.2e-123 446.0 418 55.7
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 2.3e-121 439.9 313 66.8
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 3.6e-119 432.6 381 55.4
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 6.8e-118 428.3 397 56.2
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 1.4e-110 404.1 410 49.0
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 3.1e-110 402.9 412 49.8
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 9.0e-94 348.2 249 68.7
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.3e-89 334.3 245 66.5
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 3.1e-86 323.2 278 55.8
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 7.6e-85 318.5 179 80.4
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 9.3e-83 311.6 371 45.6
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.3e-80 303.1 296 53.4
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 8.2e-79 298.5 390 42.6
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.4e-78 297.7 469 40.9
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.4e-78 297.0 171 77.8
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.4e-78 297.0 171 77.8
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.9e-66 255.4 146 78.1
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 2.6e-53 213.8 127 80.3
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 7.2e-51 205.7 217 53.0
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.3e-49 200.7 142 65.5
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.1e-46 188.7 103 82.5
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 5.0e-44 183.0 365 32.6
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 4.2e-43 179.9 123 65.9
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-39 168.3 111 72.1
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.0e-37 161.0 131 64.1
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 2.2e-36 157.5 89 80.9
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 2.2e-36 157.5 103 70.9
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 9.1e-30 135.6 102 62.7
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 4.5e-29 133.3 80 71.2
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.7e-20 104.8 230 37.0
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.9e-20 104.0 152 41.4
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 2.1e-18 97.8 67 64.2
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 4.0e-09 67.0 299 24.7
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 4.0e-09 67.0 299 24.7
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 5.2e-09 66.6 66 50.0
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 1.2e-08 65.5 304 24.7
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.2e-08 65.5 243 25.5
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.5e-08 65.1 235 24.7
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.5e-08 65.1 252 27.4
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 2.0e-08 64.7 224 26.3
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 3.4e-08 63.9 209 27.3
Migut.G00232 Erythranthe guttata HOM05D002999 ORTHO05D003137 1.3e-07 62.0 275 27.3
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 1.3e-07 62.0 289 24.2
Nitab4.5_0000557g0030 Nicotiana tabacum HOM05D003825 ORTHO05D004491 1.7e-07 61.6 215 24.7
EL10Ac9g21730 Beta vulgaris HOM05D003825 ORTHO05D004491 2.2e-07 61.2 218 25.7
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.9e-07 60.8 222 24.3
PSO170G3708 Papaver somniferum HOM05D002999 ORTHO05D003137 2.9e-07 60.8 247 25.5
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 2.9e-07 60.8 257 23.0
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 2.9e-07 60.8 260 26.2
PSO302G0054 Papaver somniferum HOM05D002999 ORTHO05D003137 3.7e-07 60.5 238 26.5
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 4.9e-07 60.1 252 26.2
Hma1.2p1_0643F.1_g194600 Hydrangea macrophylla HOM05D002999 ORTHO05D003137 6.4e-07 59.7 238 25.6
Nitab4.5_0000215g0100 Nicotiana tabacum HOM05D003825 ORTHO05D004491 6.4e-07 59.7 221 24.0
SalBow2G2809 Salvia bowleyana HOM05D002999 ORTHO05D003137 6.4e-07 59.7 164 31.7
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 6.4e-07 59.7 215 25.1
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 8.3e-07 59.3 217 23.5
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 8.3e-07 59.3 229 24.0
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 1.1e-06 58.9 150 29.3
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 1.1e-06 58.9 242 24.0
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.9e-06 58.2 254 21.7
Aa31LG8G13600 Aethionema arabicum HOM05D003825 ORTHO05D004491 2.4e-06 57.8 288 22.6
Cc02_g17630 Coffea canephora HOM05D003825 ORTHO05D004491 3.2e-06 57.4 217 23.5
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 3.2e-06 57.4 238 24.8
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 3.2e-06 57.4 215 22.3
Nitab4.5_0000295g0130 Nicotiana tabacum HOM05D002999 ORTHO05D003137 3.2e-06 57.4 284 22.9
TAR376G0761 Trochodendron aralioides HOM05D003825 ORTHO05D004491 3.2e-06 57.4 252 22.6
HPP92_013924 Vanilla planifolia HOM05D003825 ORTHO05D004491 3.2e-06 57.4 222 24.3
Nn5g29575 Nelumbo nucifera HOM05D003825 ORTHO05D004491 4.1e-06 57.0 215 23.3
RcHm_v2.0_Chr6g0264111 Rosa chinensis HOM05D003825 ORTHO05D004491 4.1e-06 57.0 218 24.3
unitig_749.g14054 Utricularia gibba HOM05D002999 ORTHO05D003137 4.1e-06 57.0 150 30.0
HPP92_014010 Vanilla planifolia HOM05D003825 ORTHO05D004491 4.1e-06 57.0 222 23.9
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 5.4e-06 56.6 229 23.1
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 5.4e-06 56.6 229 23.1
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 7.1e-06 56.2 249 23.3
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 7.1e-06 56.2 226 20.4
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 9.2e-06 55.8 265 25.7
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 9.2e-06 55.8 249 23.3
Potri.009G115300 Populus trichocarpa HOM05D003825 ORTHO05D004491 9.2e-06 55.8 215 23.3
TAR628G0260 Trochodendron aralioides HOM05D003825 ORTHO05D004491 9.2e-06 55.8 229 22.7


User provided reference genes

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