Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.3e-304 1048.9 537 100.0
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.6e-225 786.2 542 74.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.4e-221 773.1 542 73.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 7.0e-221 770.8 542 73.4
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 4.6e-220 768.1 540 73.7
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 7.0e-213 744.2 545 70.6
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.5e-210 736.5 545 68.8
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.5e-210 736.5 544 70.0
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.5e-210 736.5 544 70.0
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.5e-210 736.5 545 69.4
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 9.5e-210 733.8 542 70.1
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.4e-208 729.9 541 69.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 9.8e-207 723.8 541 69.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 9.8e-207 723.8 544 71.3
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 3.2e-205 718.8 545 71.6
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 9.2e-205 717.2 583 65.5
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.0e-203 713.8 538 68.0
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.0e-203 712.2 543 68.1
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 5.1e-203 711.4 539 68.5
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 5.1e-203 711.4 583 64.8
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 1.1e-202 710.3 540 66.7
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.1e-202 710.3 583 65.5
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.1e-201 706.1 538 68.2
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 2.8e-201 705.7 542 68.8
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 6.2e-201 704.5 542 67.9
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.1e-200 702.2 541 67.8
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 4.0e-200 701.8 544 68.6
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 4.0e-200 701.8 541 67.3
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.0e-200 701.8 542 67.9
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 6.8e-200 701.0 549 67.4
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.5e-199 699.9 549 67.2
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 9.9e-199 697.2 543 65.6
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 8.4e-198 694.1 544 67.3
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 8.4e-198 694.1 544 66.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.1e-197 693.7 542 67.7
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 7.1e-197 691.0 544 66.5
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.2e-196 690.3 540 66.9
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.7e-196 689.1 546 66.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.7e-195 686.4 540 66.3
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.3e-195 686.0 544 65.8
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.9e-195 685.3 540 66.1
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.9e-194 682.9 537 65.4
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 4.3e-194 681.8 541 66.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 9.6e-194 680.6 544 65.6
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 4.7e-193 678.3 541 64.7
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 6.2e-193 677.9 545 65.7
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 8.1e-193 677.6 542 66.4
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 8.1e-193 677.6 543 63.9
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 6.8e-192 674.5 543 66.1
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 4.4e-191 671.8 531 65.2
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.6e-191 671.0 583 62.4
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 4.9e-190 668.3 541 64.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.4e-190 667.9 583 62.1
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-189 667.2 583 61.9
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.4e-189 664.8 583 61.9
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.7e-188 662.5 583 61.4
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.8e-188 661.0 540 64.1
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-187 659.8 549 64.1
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-187 659.8 555 64.0
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.3e-187 659.4 540 64.3
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 6.6e-187 657.9 544 62.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 9.6e-186 654.1 547 63.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.8e-185 652.5 526 65.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.8e-185 651.7 584 61.0
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 4.8e-185 651.7 527 63.4
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.8e-184 649.8 541 62.8
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.4e-184 649.4 539 63.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 4.0e-184 648.7 538 61.5
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 5.3e-184 648.3 542 60.1
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 6.9e-184 647.9 541 63.2
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.5e-183 646.7 545 62.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 5.8e-183 644.8 537 62.4
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 8.4e-182 641.0 543 63.4
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-181 639.8 542 60.7
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.4e-181 639.4 537 63.1
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.6e-180 636.7 542 59.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 3.5e-180 635.6 542 59.6
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.3e-179 633.6 542 59.6
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.3e-179 632.9 532 62.6
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.9e-179 632.1 542 59.4
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 3.9e-179 632.1 542 59.2
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.9e-179 632.1 527 64.5
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.6e-177 626.7 536 61.4
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.6e-177 626.7 548 60.0
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.8e-177 625.9 542 62.5
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.8e-176 623.2 528 61.9
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.4e-176 622.9 513 64.1
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.1e-176 622.5 544 59.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.5e-175 620.2 544 61.8
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 4.5e-175 618.6 544 57.9
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 5.5e-173 611.7 542 59.0
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 5.1e-171 605.1 546 58.2
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 2.5e-170 602.8 570 58.8
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.1e-168 597.4 532 59.6
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 3.4e-167 592.4 532 59.4
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 4.9e-166 588.6 538 56.3
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 2.1e-161 573.2 538 57.1
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 2.2e-158 563.1 548 54.9
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 9.3e-157 557.8 548 54.9
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.1e-156 556.6 414 69.1
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 4.1e-144 515.8 410 64.1
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.1e-141 507.7 418 63.2
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.1e-141 507.7 426 63.8
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 3.0e-131 473.0 503 51.7
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.0e-127 460.3 545 48.4
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.6e-124 450.7 355 64.2
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.1e-120 438.0 486 50.6
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 5.0e-118 429.1 579 41.6
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 5.7e-114 415.6 319 67.1
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 9.8e-114 414.8 463 50.1
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.1e-109 401.4 545 46.6
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.4e-107 394.4 350 59.4
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-105 387.1 427 53.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 8.9e-99 365.2 489 42.7
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.0e-98 364.0 316 61.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 7.5e-98 362.1 499 40.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.7e-97 360.9 514 41.1
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 2.1e-92 344.0 426 48.6
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.4e-91 341.3 266 65.8
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-87 328.2 504 41.1
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 3.5e-87 326.6 504 41.1
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.3e-86 324.7 481 39.7
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 5.6e-85 319.3 342 53.5
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 4.9e-65 253.1 272 54.0
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.1e-59 233.8 227 58.6
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.6e-58 230.7 238 57.6
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 9.9e-58 228.8 195 56.4
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 9.0e-43 179.1 110 82.7
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 3.8e-41 173.7 120 70.8
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.6e-39 168.3 171 56.7
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.1e-35 153.7 105 72.4
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 2.0e-34 151.4 196 50.0
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.6e-34 151.0 113 68.1
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.6e-31 140.2 104 67.3
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 2.3e-30 137.9 581 23.9
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 3.9e-30 137.1 97 70.1
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 5.1e-30 136.7 114 60.5
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.1e-29 135.6 462 28.4
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 7.4e-29 132.9 550 26.2
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.2e-28 131.3 89 75.3
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 4.1e-27 127.1 88 62.5
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 5.9e-26 123.2 498 25.7
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.7e-23 114.4 88 69.3
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.6e-18 98.6 109 50.5
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.2e-16 90.5 95 46.3
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 5.7e-13 80.1 123 42.3
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 6.3e-12 76.6 83 53.0
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.2e-09 68.2 454 21.4
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 6.8e-06 56.6 71 40.8
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 6.8e-06 56.6 508 23.4


User provided reference genes

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