Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 0.0e+00 1137.9 583 100.0
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 3.1e-166 589.3 596 56.9
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 9.5e-163 577.8 594 55.4
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 3.6e-162 575.9 602 55.0
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.4e-153 547.4 693 48.2
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 8.9e-153 544.7 593 52.8
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 8.9e-153 544.7 584 53.8
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 2.2e-151 540.0 555 56.0
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 4.1e-150 535.8 593 52.4
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.1e-150 535.8 590 53.7
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 6.0e-149 531.9 585 53.3
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 6.2e-146 521.9 592 52.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.1e-145 519.6 589 52.5
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 9.2e-142 508.1 605 49.9
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 3.9e-140 502.7 595 51.3
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.1e-139 501.1 579 51.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 1.5e-139 500.7 598 49.8
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.5e-139 500.7 589 51.1
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.5e-139 500.7 597 51.1
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.3e-139 499.6 599 51.3
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 7.3e-139 498.4 581 51.3
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.1e-137 494.6 588 50.5
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.4e-137 494.2 576 50.0
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.1e-137 493.0 611 49.4
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 4.0e-137 492.7 580 50.0
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.0e-136 490.3 587 49.1
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 2.6e-136 490.0 598 49.3
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 5.8e-136 488.8 598 49.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.8e-136 488.8 582 50.3
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.3e-135 487.6 618 47.6
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.3e-135 487.6 587 49.7
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.3e-135 487.6 598 49.7
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 6.4e-135 485.3 582 50.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.9e-134 483.8 603 50.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-134 483.8 603 50.1
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.4e-134 483.4 584 49.3
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 7.1e-134 481.9 566 49.1
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.2e-134 481.5 603 50.1
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 9.2e-134 481.5 577 50.6
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.7e-133 479.9 587 50.9
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.8e-133 478.4 588 50.2
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.0e-132 476.5 586 50.0
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 3.0e-132 476.5 599 48.7
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.1e-132 475.7 604 49.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.6e-130 470.7 642 46.9
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 6.8e-129 465.3 583 48.9
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.7e-127 460.7 606 47.4
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.7e-127 460.7 613 45.0
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 6.4e-127 458.8 583 47.5
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.4e-126 457.6 553 49.0
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.9e-126 457.2 594 49.2
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 5.4e-126 455.7 609 47.0
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 2.7e-125 453.4 576 48.8
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 7.8e-125 451.8 606 46.0
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 3.3e-123 446.4 614 43.8
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.3e-122 444.5 591 48.7
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.5e-120 437.6 587 46.8
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 3.8e-119 433.0 554 47.3
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.4e-118 430.3 604 46.9
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.1e-117 427.2 645 42.9
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 1.0e-116 424.9 588 46.6
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 6.9e-113 412.1 590 45.6
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.0e-113 411.8 604 45.4
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.7e-111 407.5 589 45.3
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.7e-111 407.5 558 48.6
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.2e-111 407.1 599 44.9
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.8e-108 397.5 542 44.5
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 5.8e-104 382.5 588 41.7
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.7e-103 380.9 519 45.7
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 6.5e-103 379.0 579 41.8
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 5.5e-102 375.9 644 40.8
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.6e-101 374.4 517 44.9
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.0e-100 371.7 515 45.0
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-100 371.7 517 45.1
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.9e-100 369.8 593 42.0
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 8.7e-100 368.6 512 46.3
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.5e-99 367.1 586 40.1
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.7e-99 365.9 582 41.4
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 7.4e-99 365.5 585 41.0
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.3e-98 364.8 582 40.7
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 3.7e-98 363.2 594 40.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.8e-97 360.9 583 41.9
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.4e-97 360.5 586 41.1
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 6.9e-97 359.0 484 46.5
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 4.5e-96 356.3 584 40.9
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 4.5e-96 356.3 584 41.3
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-94 351.7 584 40.9
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.5e-94 350.5 583 40.7
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 7.2e-94 349.0 584 40.8
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.3e-92 344.0 288 62.5
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.3e-92 344.0 582 39.3
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.3e-92 344.0 542 40.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 2.5e-91 340.5 580 40.3
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.3e-91 339.7 613 40.1
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.8e-90 336.3 599 38.9
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 3.1e-89 333.6 581 39.6
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.2e-88 331.6 580 40.3
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.2e-88 331.6 580 40.3
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.2e-88 331.6 580 40.3
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.2e-87 327.4 494 44.9
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 3.8e-87 326.6 572 39.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-86 325.1 498 45.2
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.1e-85 320.9 501 41.9
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.1e-83 315.1 590 38.6
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 9.7e-83 312.0 331 53.5
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.2e-82 310.8 585 37.6
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 6.3e-82 309.3 603 36.3
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 6.3e-82 309.3 541 39.9
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-79 301.6 586 38.2
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 7.2e-78 295.8 440 45.7
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.1e-75 288.5 603 36.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.7e-74 284.6 582 36.8
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 3.8e-71 273.5 603 35.2
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 6.5e-71 272.7 231 61.9
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.6e-69 268.1 594 34.5
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.6e-67 260.8 506 39.1
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.3e-67 260.4 494 38.1
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-66 258.5 269 53.2
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.8e-65 254.6 602 33.7
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-65 254.6 422 43.6
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-63 248.8 602 33.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.7e-61 240.7 604 33.3
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.2e-56 225.3 621 31.2
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 2.5e-54 217.6 358 41.3
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.7e-53 213.4 276 43.1
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.3e-50 205.3 288 44.4
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.7e-50 204.9 427 37.7
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.4e-49 199.9 468 35.0
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-47 194.5 516 32.4
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 7.3e-46 189.5 346 37.6
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 8.6e-39 166.0 328 39.9
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.2e-35 155.6 100 73.0
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.4e-35 153.7 118 63.6
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 4.9e-34 150.2 155 50.3
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.9e-34 150.2 163 47.2
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.0e-32 144.8 385 31.9
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 3.3e-30 137.5 122 51.6
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 4.7e-29 133.7 419 31.3
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 6.2e-29 133.3 311 29.3
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.3e-28 131.3 118 58.5
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.6e-23 113.2 146 45.9
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 8.1e-21 106.3 130 48.5
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 8.1e-21 106.3 118 44.9
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 8.9e-20 102.8 287 31.0
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 7.6e-19 99.8 161 38.5
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.4e-17 95.5 101 51.5
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.1e-13 81.6 125 46.4
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 8.7e-07 59.7 66 48.5
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 4.3e-06 57.4 57 57.9


User provided reference genes

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