Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.1e-72 276.6 146 100.0
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.2e-34 150.2 142 59.9
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.4e-33 146.7 139 59.7
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 1.9e-32 142.9 131 58.0
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 5.7e-32 141.4 134 58.2
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 1.4e-30 136.7 164 53.0
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 1.4e-30 136.7 149 53.0
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 1.4e-30 136.7 127 60.6
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 1.8e-30 136.3 146 50.7
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.8e-30 136.3 129 59.7
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 2.4e-30 136.0 128 59.4
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 9.1e-30 134.0 145 53.8
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.2e-29 133.7 134 56.0
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 1.5e-29 133.3 139 51.8
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 2.6e-29 132.5 153 50.3
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 4.5e-29 131.7 162 50.0
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 3.8e-28 128.6 188 45.2
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 8.5e-28 127.5 137 52.6
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.1e-27 127.1 153 47.7
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.9e-27 126.3 138 48.6
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.5e-27 125.9 118 57.6
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.2e-27 124.4 133 54.9
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 7.2e-27 124.4 126 54.0
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 9.4e-27 124.0 137 51.8
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 9.4e-27 124.0 136 49.3
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.6e-26 123.2 151 50.3
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.1e-26 122.9 137 51.8
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.1e-26 122.9 137 51.8
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 2.1e-26 122.9 136 49.3
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.7e-26 122.5 133 54.1
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 3.6e-26 122.1 136 49.3
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 4.7e-26 121.7 160 46.2
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 7.9e-26 120.9 137 48.2
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 1.8e-25 119.8 142 50.7
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 1.8e-25 119.8 139 51.1
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 1.8e-25 119.8 148 49.3
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.0e-25 119.0 155 46.5
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 3.0e-25 119.0 146 47.3
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 3.9e-25 118.6 161 44.1
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 5.1e-25 118.2 145 45.5
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 5.1e-25 118.2 146 50.7
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.5e-24 116.7 120 55.0
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 2.0e-24 116.3 157 45.9
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 2.6e-24 115.9 149 47.0
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 3.3e-24 115.5 135 51.9
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 5.7e-24 114.8 146 47.3
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 9.7e-24 114.0 136 50.0
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 9.7e-24 114.0 151 47.0
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 1.7e-23 113.2 149 44.3
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 2.8e-23 112.5 129 53.5
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 3.7e-23 112.1 141 48.2
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.8e-23 111.7 132 45.5
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 4.8e-23 111.7 153 46.4
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 8.2e-23 110.9 120 53.3
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 1.4e-22 110.2 142 49.3
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 1.8e-22 109.8 146 49.3
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 3.1e-22 109.0 133 45.9
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 7.0e-22 107.8 158 43.0
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 7.0e-22 107.8 142 48.6
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 7.0e-22 107.8 131 45.0
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 9.1e-22 107.5 147 46.9
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 1.2e-21 107.1 133 45.9
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 2.0e-21 106.3 141 48.2
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 7.7e-21 104.4 126 50.8
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 7.7e-21 104.4 144 46.5
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 1.3e-20 103.6 117 51.3
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.7e-20 103.2 129 47.3
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.7e-20 103.2 134 47.8
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 2.2e-20 102.8 129 44.2
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 2.2e-20 102.8 124 47.6
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 3.8e-20 102.1 135 46.7
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 3.8e-20 102.1 132 47.0
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.4e-19 100.1 144 41.7
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 3.2e-19 99.0 139 41.0
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 1.6e-18 96.7 169 37.3
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 2.7e-18 95.9 116 47.4
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 4.7e-18 95.1 128 44.5
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 6.1e-18 94.7 135 42.2
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 1.4e-17 93.6 125 44.0
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 2.3e-17 92.8 146 41.8
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 2.3e-17 92.8 159 39.0
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 3.0e-17 92.4 154 40.9
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 3.9e-17 92.0 115 48.7
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 6.7e-17 91.3 123 42.3
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 6.7e-17 91.3 115 47.8
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 8.8e-17 90.9 108 44.4
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 8.8e-17 90.9 132 38.6
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 8.8e-17 90.9 132 38.6
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 8.8e-17 90.9 158 41.1
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 1.1e-16 90.5 129 39.5
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 1.1e-16 90.5 145 40.7
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 2.0e-16 89.7 139 39.6
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 4.4e-16 88.6 139 38.1
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 5.7e-16 88.2 128 42.2
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 7.4e-16 87.8 150 38.7
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 7.4e-16 87.8 134 44.0
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 1.3e-15 87.0 137 39.4
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 1.3e-15 87.0 137 39.4
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 1.3e-15 87.0 137 39.4
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 1.3e-15 87.0 150 38.7
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 1.7e-15 86.7 135 40.7
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 2.2e-15 86.3 124 41.9
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 2.2e-15 86.3 225 30.2
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 3.7e-15 85.5 138 39.9
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 4.8e-15 85.1 204 34.3
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 6.3e-15 84.7 141 36.2
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 1.1e-14 84.0 135 35.6
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 7.7e-13 77.8 120 40.0
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 2.5e-11 72.8 141 36.2
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 3.2e-11 72.4 141 36.9
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 2.1e-10 69.7 125 36.8
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 3.6e-10 68.9 103 42.7
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.4e-09 67.0 133 34.6
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 4.0e-09 65.5 147 33.3
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 4.0e-09 65.5 183 30.6
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 9.7e-08 60.8 60 50.0
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.3e-07 60.5 58 51.7
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 2.8e-07 59.3 85 41.2
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 2.8e-07 59.3 78 46.2
MD01G1057900 Malus domestica HOM05D006065 ORTHO05D007672 4.8e-07 58.5 64 48.4
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.4e-06 57.0 102 41.2
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 3.1e-06 55.8 90 32.2
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 3.1e-06 55.8 88 36.4
Zm00001eb429300 Zea mays HOM05D006065 ORTHO05D007672 5.3e-06 55.1 128 27.3


User provided reference genes

Program Settings