Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 4.2e-133 478.0 238 100.0
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.1e-96 355.5 242 77.3
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 9.1e-96 354.0 242 76.0
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.5e-95 353.2 242 74.0
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 4.5e-95 351.7 242 75.2
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 5.0e-94 348.2 243 73.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.0e-94 348.2 243 73.3
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.0e-94 348.2 243 73.3
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 6.5e-94 347.8 243 73.3
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.4e-93 346.7 241 73.4
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 3.2e-93 345.5 240 74.6
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 3.2e-93 345.5 245 71.8
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.2e-93 345.1 241 73.0
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.2e-93 344.4 243 72.8
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 9.4e-93 344.0 243 73.3
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.1e-92 342.8 240 73.3
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.1e-92 342.8 241 72.6
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 2.7e-92 342.4 244 73.0
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.7e-92 341.7 243 72.8
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 6.1e-92 341.3 242 73.6
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.0e-91 340.5 242 71.9
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.1e-90 337.0 246 70.7
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 2.0e-90 336.3 244 71.3
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 7.4e-90 334.3 241 71.4
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 7.4e-90 334.3 241 71.0
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.4e-90 334.3 240 72.1
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 2.8e-89 332.4 241 72.2
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 3.7e-89 332.0 241 73.0
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 8.2e-89 330.9 246 68.7
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 1.1e-88 330.5 242 71.9
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 4.1e-88 328.6 241 72.2
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.6e-87 326.6 230 71.7
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 2.6e-87 325.9 241 70.5
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 2.6e-87 325.9 242 69.4
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.6e-87 325.9 240 69.6
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 4.5e-87 325.1 241 71.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 5.9e-87 324.7 246 68.3
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 7.7e-87 324.3 189 83.6
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 7.7e-87 324.3 227 73.6
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 7.7e-87 324.3 242 67.8
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.0e-86 323.9 243 71.2
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-86 323.6 242 68.6
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.3e-86 323.6 242 67.8
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.2e-86 322.8 189 82.5
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.9e-86 322.4 240 67.5
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 2.9e-86 322.4 240 67.1
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 2.9e-86 322.4 250 68.0
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.8e-86 322.0 246 66.3
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.5e-86 321.2 242 68.2
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 6.5e-86 321.2 247 67.2
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 8.5e-86 320.9 242 66.9
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.1e-85 320.5 189 83.1
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.5e-85 319.3 194 78.4
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 4.2e-85 318.5 245 66.9
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 7.2e-85 317.8 252 67.1
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 9.4e-85 317.4 246 66.3
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 1.2e-84 317.0 242 66.1
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.2e-84 317.0 244 67.2
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 2.1e-84 316.2 242 67.8
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.0e-83 313.9 243 67.9
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 3.0e-83 312.4 232 70.3
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 4.0e-83 312.0 246 66.3
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 5.2e-83 311.6 231 68.0
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 6.7e-83 311.2 244 66.8
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 8.8e-83 310.8 242 65.7
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.2e-82 310.5 245 66.9
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.5e-82 310.1 256 64.8
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.0e-82 309.7 189 77.8
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.3e-82 308.9 241 65.1
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 5.7e-82 308.1 252 65.9
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 7.5e-82 307.8 243 67.1
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 9.7e-82 307.4 248 67.7
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 9.7e-82 307.4 241 68.0
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.3e-81 307.0 242 65.7
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.7e-81 306.6 243 66.7
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.7e-81 306.6 243 67.1
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.8e-81 305.8 216 69.9
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 3.7e-81 305.4 246 67.5
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 4.8e-81 305.1 243 64.6
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 6.3e-81 304.7 245 69.4
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 1.8e-80 303.1 244 66.0
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.8e-80 303.1 189 76.7
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 3.1e-80 302.4 204 73.5
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 4.1e-80 302.0 188 77.7
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 2.7e-79 299.3 242 66.1
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 5.9e-79 298.1 253 65.2
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.0e-78 297.4 239 67.8
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.9e-78 295.8 241 63.9
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 3.8e-78 295.4 218 68.3
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.8e-78 295.4 207 71.5
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 3.8e-78 295.4 227 65.2
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 5.0e-78 295.0 249 63.9
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 1.1e-77 293.9 246 65.0
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 1.1e-77 293.9 245 64.5
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 3.2e-77 292.4 222 66.7
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 4.2e-77 292.0 197 71.1
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 7.2e-77 291.2 252 62.3
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 9.4e-77 290.8 245 63.3
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 9.4e-77 290.8 245 63.3
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.2e-76 290.4 188 72.9
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 3.6e-76 288.9 248 64.1
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 4.7e-76 288.5 247 61.9
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 4.7e-76 288.5 250 63.2
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 4.7e-76 288.5 253 63.6
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.8e-75 286.6 193 72.0
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 2.3e-75 286.2 215 70.2
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 6.8e-75 284.6 193 74.1
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 2.2e-73 279.6 251 59.8
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.8e-73 279.3 231 59.3
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.1e-72 277.3 220 67.7
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 2.3e-70 269.6 192 71.4
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 8.6e-70 267.7 197 67.0
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 8.6e-70 267.7 160 80.6
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 8.0e-68 261.2 197 66.5
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 1.7e-62 243.4 206 63.6
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.1e-56 222.2 208 59.6
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 2.5e-53 213.0 121 82.6
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.6e-52 210.3 121 81.8
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 3.1e-51 206.1 120 81.7
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-47 194.1 176 57.4
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.9e-45 186.8 111 78.4
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 3.3e-45 186.0 142 59.9
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 2.1e-44 183.3 206 48.1
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 6.2e-44 181.8 178 50.0
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.4e-43 180.6 162 58.6
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 7.8e-39 164.9 156 50.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.4e-35 153.3 173 48.6
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 1.5e-29 134.0 175 39.4
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.3e-25 120.9 68 83.8
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.5e-18 97.4 114 51.8
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.6e-15 87.4 141 31.9
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 4.6e-15 85.9 115 43.5
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 9.6e-13 78.2 130 35.4
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.4e-11 73.6 102 47.1
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 1.2e-07 61.2 55 60.0


User provided reference genes

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