Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 8.6e-106 387.1 212 100.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 3.1e-79 298.9 212 77.4
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 9.0e-79 297.4 211 76.8
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 1.2e-78 297.0 212 75.5
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 1.9e-76 289.7 212 74.1
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 1.9e-76 289.7 212 74.1
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 7.1e-76 287.7 212 72.2
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 1.3e-74 283.5 212 72.6
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 1.8e-74 283.1 213 72.8
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 6.7e-74 281.2 214 73.4
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 1.1e-73 280.4 213 73.2
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.5e-73 279.3 212 72.2
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 3.3e-73 278.9 212 72.2
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 5.6e-73 278.1 212 70.8
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 7.4e-73 277.7 212 71.7
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 9.6e-73 277.3 213 72.8
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.3e-72 276.9 212 71.7
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 4.8e-72 275.0 214 72.0
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 6.2e-72 274.6 212 71.2
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 8.1e-72 274.2 212 70.8
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.1e-71 273.9 203 72.4
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 1.4e-71 273.5 210 71.0
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.8e-71 273.1 211 71.1
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 3.1e-71 272.3 212 70.8
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 6.9e-71 271.2 210 71.0
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 2.0e-70 269.6 210 69.0
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.0e-70 269.6 210 70.5
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 3.4e-70 268.9 212 69.3
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 5.8e-70 268.1 212 68.4
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 2.9e-69 265.8 212 71.2
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 3.8e-69 265.4 210 69.0
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 6.5e-69 264.6 213 68.5
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 1.4e-68 263.5 210 68.6
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 5.5e-68 261.5 206 70.9
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.2e-67 260.4 203 69.0
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.2e-67 260.4 203 70.9
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 6.7e-66 254.6 212 66.5
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 6.7e-66 254.6 207 67.1
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 8.7e-66 254.2 210 66.2
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 9.6e-65 250.8 212 64.2
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 1.6e-64 250.0 212 63.7
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 6.2e-64 248.1 182 72.0
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 1.4e-63 246.9 210 63.8
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 2.4e-63 246.1 212 63.7
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 1.5e-62 243.4 212 65.6
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 2.6e-62 242.7 212 60.8
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.1e-60 237.3 212 61.3
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 1.4e-60 236.9 210 63.8
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 3.2e-60 235.7 201 67.2
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 9.3e-60 234.2 214 59.8
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.6e-59 233.4 208 63.0
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 1.0e-58 230.7 203 62.1
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 1.9e-57 226.5 210 64.3
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 2.8e-56 222.6 203 63.1
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.3e-53 213.8 168 67.3
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 1.3e-53 213.8 158 69.6
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 5.0e-53 211.8 212 56.6
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 1.6e-51 206.8 212 57.5
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 2.2e-48 196.4 210 57.6
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 2.2e-45 186.4 188 53.2
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 7.2e-44 181.4 194 55.7
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 8.8e-42 174.5 198 48.5
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 5.7e-41 171.8 198 47.5
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 1.9e-36 156.8 205 45.4
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 4.0e-34 149.1 106 69.8
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 1.1e-33 147.5 106 68.9
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.4e-26 124.0 106 60.4
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 8.3e-24 114.8 203 39.9
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 4.5e-22 109.0 127 49.6
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 2.2e-21 106.7 112 54.5
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.5e-20 104.0 89 64.0
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 1.8e-18 97.1 183 36.6
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 4.0e-18 95.9 82 61.0
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 7.5e-17 91.7 113 40.7
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 3.6e-11 72.8 187 31.6
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 4.7e-11 72.4 164 39.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.0e-09 67.0 54 59.3
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 1.2e-06 57.8 124 35.5
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 3.5e-06 56.2 187 28.3


User provided reference genes

Program Settings