Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 4.1e-124 448.0 212 100.0
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.5e-105 386.3 213 83.1
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 4.3e-105 384.8 213 83.6
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 6.2e-104 380.9 212 80.7
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 5.8e-102 374.4 213 82.2
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.3e-101 373.2 213 81.7
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 3.7e-101 371.7 213 80.8
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 4.9e-101 371.3 213 79.8
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 1.9e-100 369.4 212 80.2
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.2e-100 368.6 212 80.7
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.1e-100 368.2 212 80.2
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 79.3
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 79.8
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 9.2e-100 367.1 213 78.9
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 9.2e-100 367.1 213 79.8
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.2e-99 366.7 213 78.9
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 78.4
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.6e-99 364.8 212 79.2
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 6.0e-99 364.4 209 80.4
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.0e-98 363.6 213 78.9
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.3e-98 363.2 213 79.3
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.7e-98 362.8 213 77.0
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 5.1e-98 361.3 211 78.7
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 5.1e-98 361.3 208 79.8
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 6.6e-98 360.9 213 79.3
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 8.6e-98 360.5 214 79.0
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.9e-97 359.4 213 79.3
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 2.5e-97 359.0 210 78.1
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 2.5e-97 359.0 212 79.2
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 3.3e-97 358.6 211 77.7
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 3.3e-97 358.6 204 80.9
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 5.6e-97 357.8 209 79.4
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 5.6e-97 357.8 213 77.0
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 7.3e-97 357.5 212 77.8
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 9.6e-97 357.1 213 77.5
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 9.6e-97 357.1 213 77.9
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.2e-96 356.7 213 78.4
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.1e-96 355.9 213 75.6
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 78.4
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.1e-95 353.6 209 78.0
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.1e-95 353.6 209 78.0
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.1e-95 353.6 208 78.8
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.4e-95 353.2 213 78.4
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.8e-95 352.8 209 77.5
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.8e-95 352.8 211 77.7
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 2.4e-95 352.4 213 76.1
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.1e-95 352.1 213 77.0
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 4.0e-95 351.7 208 78.4
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 4.0e-95 351.7 213 76.5
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.2e-95 351.3 213 78.4
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 6.8e-95 350.9 208 77.9
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 76.9
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.5e-94 349.7 209 76.6
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.5e-94 349.7 213 75.1
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 2.0e-94 349.4 213 76.1
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 3.4e-94 348.6 213 74.6
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 4.4e-94 348.2 209 76.6
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 4.4e-94 348.2 209 77.0
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 4.4e-94 348.2 208 76.4
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 5.8e-94 347.8 213 77.5
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 7.6e-94 347.4 213 76.1
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.3e-93 346.7 209 78.0
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.7e-93 346.3 234 70.1
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.7e-93 346.3 213 77.0
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.7e-93 346.3 213 77.0
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 1.7e-93 346.3 208 76.0
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 2.2e-93 345.9 211 77.3
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 2.9e-93 345.5 207 76.8
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 2.9e-93 345.5 208 76.4
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.8e-93 345.1 198 78.8
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 3.8e-93 345.1 210 74.3
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 6.4e-93 344.4 207 77.3
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.1e-92 343.6 206 76.2
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 3.2e-92 342.0 207 74.9
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 3.2e-92 342.0 210 73.3
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 4.2e-92 341.7 208 75.5
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 5.4e-92 341.3 209 74.6
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 9.3e-92 340.5 208 74.5
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 1.2e-91 340.1 204 77.0
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 1.2e-91 340.1 253 66.8
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.2e-91 340.1 208 74.5
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.6e-91 339.7 206 75.7
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 3.5e-91 338.6 208 74.0
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 3.5e-91 338.6 204 76.0
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 4.6e-91 338.2 206 75.2
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 4.6e-91 338.2 206 74.8
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 4.6e-91 338.2 206 74.8
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.6e-91 338.2 209 74.6
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 6.0e-91 337.8 204 77.0
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 6.0e-91 337.8 213 74.2
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 7.8e-91 337.4 208 74.0
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 1.0e-90 337.0 209 73.2
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.7e-90 336.3 207 73.9
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 3.0e-90 335.5 193 79.3
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 5.1e-90 334.7 204 76.0
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 5.1e-90 334.7 209 74.2
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 1.5e-89 333.2 204 75.5
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 1.9e-89 332.8 206 73.8
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 7.3e-89 330.9 206 73.3
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 9.6e-89 330.5 206 73.3
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.6e-88 329.7 217 71.0
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 3.6e-88 328.6 233 66.1
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 8.1e-88 327.4 211 72.5
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 1.4e-87 326.6 209 70.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 4.0e-87 325.1 213 72.8
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 9.0e-87 323.9 209 71.8
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 2.6e-86 322.4 217 70.5
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 4.4e-86 321.6 201 70.1
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 2.9e-85 318.9 200 70.0
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 3.8e-85 318.5 201 68.7
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 6.4e-85 317.8 209 70.3
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 8.4e-85 317.4 209 70.3
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 5.4e-84 314.7 201 68.7
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 7.1e-84 314.3 214 71.5
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.1e-80 302.8 295 52.2
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 4.8e-80 301.6 212 68.4
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.1e-79 300.4 178 79.8
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 4.0e-79 298.5 166 81.3
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.4e-76 289.3 173 78.0
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 4.5e-70 268.5 428 39.7
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 1.6e-67 260.0 145 80.7
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 7.9e-67 257.7 145 80.7
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 1.9e-65 253.1 145 79.3
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.5e-65 252.7 170 68.2
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.1e-60 237.3 204 58.3
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 2.2e-53 213.0 140 66.4
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 6.5e-53 211.5 113 83.2
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.6e-46 189.5 125 70.4
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 3.4e-46 189.1 199 46.7
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 4.5e-46 188.7 195 48.2
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.6e-41 172.9 109 74.3
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 8.2e-40 167.9 166 50.6
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 1.2e-38 164.1 196 41.3
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.1e-36 157.5 88 77.3
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 5.7e-33 145.2 97 71.1
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.4e-31 140.6 73 83.6
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 2.9e-29 132.9 95 66.3
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 5.0e-29 132.1 79 78.5
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 9.4e-20 101.3 69 66.7
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.6e-19 100.5 74 62.2
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 5.7e-17 92.0 66 63.6
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.3e-16 90.9 72 62.5
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.4e-15 87.4 60 66.7
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 3.0e-10 69.7 40 80.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 5.7e-09 65.5 35 80.0
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 8.3e-08 61.6 35 68.6
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 3.2e-07 59.7 59 50.8
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 7.0e-07 58.5 32 84.4


User provided reference genes

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