Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 1.5e-124 449.5 218 100.0
CANSAT01G2977 Cannabis sativa HOM05D000371 ORTHO05D003573 7.9e-38 161.4 81 93.8
Potri.005G079700 Populus trichocarpa HOM05D000371 ORTHO05D003573 2.5e-23 113.2 114 51.8
Sabra05G0065400 Salix brachista HOM05D000371 ORTHO05D003573 7.2e-23 111.7 114 51.8
Ciclev10027543m.g Citrus clementina HOM05D000371 ORTHO05D003573 1.2e-22 110.9 74 64.9
CiPaw.04G095600 Carya illinoinensis HOM05D000371 ORTHO05D003573 4.7e-22 109.0 129 47.3
Prupe.6G179400 Prunus persica HOM05D000371 ORTHO05D003573 1.0e-21 107.8 88 60.2
Cfa002717 Carpinus fangiana HOM05D000371 ORTHO05D003573 1.8e-21 107.1 104 54.8
Manes.13G090300 Manihot esculenta HOM05D000371 ORTHO05D003573 3.0e-21 106.3 69 68.1
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 8.8e-21 104.8 53 90.6
Peaxi162Scf00204g00097 Petunia axillaris HOM05D000371 ORTHO05D003573 8.8e-21 104.8 69 65.2
RcHm_v2.0_Chr2g0115501 Rosa chinensis HOM05D000371 ORTHO05D003573 1.1e-20 104.4 83 56.6
TAR376G0781 Trochodendron aralioides HOM05D000371 ORTHO05D003573 1.1e-20 104.4 70 70.0
GSVIVG01022183001 Vitis vinifera HOM05D000371 ORTHO05D003573 1.5e-20 104.0 77 62.3
QL06p050463 Quercus lobata HOM05D000371 ORTHO05D003573 2.0e-20 103.6 83 56.6
Cpa.g.sc231.3 Carica papaya HOM05D000371 ORTHO05D003573 4.4e-20 102.4 76 64.5
Haze_24993 Corylus avellana HOM05D000371 ORTHO05D003573 4.4e-20 102.4 104 52.9
Nitab4.5_0000518g0080 Nicotiana tabacum HOM05D000371 ORTHO05D003573 4.4e-20 102.4 82 58.5
FvH4_1g21630 Fragaria vesca HOM05D000371 ORTHO05D003573 5.7e-20 102.1 122 45.9
FAN23G0210 Fragaria x ananassa HOM05D000371 ORTHO05D003573 5.7e-20 102.1 122 45.9
MD15G1328100 Malus domestica HOM05D000371 ORTHO05D003573 5.7e-20 102.1 81 63.0
Nn1g05260 Nelumbo nucifera HOM05D000371 ORTHO05D003573 5.7e-20 102.1 70 67.1
TAR376G0231 Trochodendron aralioides HOM05D000371 ORTHO05D003573 5.7e-20 102.1 70 68.6
Cc07_g15630 Coffea canephora HOM05D000371 ORTHO05D003573 7.4e-20 101.7 77 59.7
Dinv16317 Davidia involucrata HOM05D000371 ORTHO05D003573 7.4e-20 101.7 79 60.8
Sed0019790 Sechium edule HOM05D000371 ORTHO05D003573 7.4e-20 101.7 69 65.2
Atru.chr4.246 Acer truncatum HOM05D000371 ORTHO05D003573 9.7e-20 101.3 69 63.8
ClCG01G018990 Citrullus lanatus HOM05D000371 ORTHO05D003573 9.7e-20 101.3 70 64.3
Hma1.2p1_0011F.1_g007100 Hydrangea macrophylla HOM05D000371 ORTHO05D003573 1.3e-19 100.9 72 63.9
Solyc04g054520.3 Solanum lycopersicum HOM05D000371 ORTHO05D003573 1.3e-19 100.9 69 63.8
Sopen04g024340 Solanum pennellii HOM05D000371 ORTHO05D003573 1.3e-19 100.9 69 63.8
FAN26G1706 Fragaria x ananassa HOM05D000371 ORTHO05D003573 2.2e-19 100.1 122 45.1
Nitab4.5_0000214g0120 Nicotiana tabacum HOM05D000371 ORTHO05D003573 2.2e-19 100.1 69 63.8
MELO3C007778.2 Cucumis melo HOM05D000371 ORTHO05D003573 2.8e-19 99.8 70 62.9
CsaV3_6G045680 Cucumis sativus L. HOM05D000371 ORTHO05D003573 2.8e-19 99.8 70 62.9
FAN19G3171 Fragaria x ananassa HOM05D000371 ORTHO05D003573 2.8e-19 99.8 122 45.1
FAN28G0924 Fragaria x ananassa HOM05D000371 ORTHO05D003573 3.7e-19 99.4 122 45.1
Thecc.01G107300 Theobroma cacao HOM05D000371 ORTHO05D003573 3.7e-19 99.4 82 58.5
MBI02_g19401_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D003573 6.3e-19 98.6 70 62.9
TWI77G0598 Tripterygium wilfordii HOM05D000371 ORTHO05D003573 6.3e-19 98.6 105 48.6
CAN.G727.3 Capsicum annuum HOM05D000371 ORTHO05D003573 1.1e-18 97.8 69 60.9
Rhsim10G0156600 Rhododendron simsii HOM05D000371 ORTHO05D003573 1.1e-18 97.8 65 66.2
Gohir.D11G224900 Gossypium hirsutum HOM05D000371 ORTHO05D003573 1.4e-18 97.4 69 62.3
Gorai.007G242100 Gossypium raimondii HOM05D000371 ORTHO05D003573 1.4e-18 97.4 69 62.3
PGSC0003DMG400022039 Solanum tuberosum HOM05D000371 ORTHO05D003573 1.4e-18 97.4 69 60.9
Duzib264G1096 Durio zibethinus HOM05D000371 ORTHO05D003573 2.4e-18 96.7 69 62.3
COL.COLO4_11054 Corchorus olitorius HOM05D000371 ORTHO05D003573 3.1e-18 96.3 82 58.5
Gohir.A11G199300 Gossypium hirsutum HOM05D000371 ORTHO05D003573 4.1e-18 95.9 69 60.9
Eucgr.I00381 Eucalyptus grandis HOM05D000371 ORTHO05D003573 5.3e-18 95.5 94 50.0
A01p00600 Brassica napus HOM05D000371 ORTHO05D003573 7.0e-18 95.1 71 60.6
BraA01t00068Z Brassica rapa HOM05D000371 ORTHO05D003573 7.0e-18 95.1 71 60.6
vmacro12938 Vaccinium macrocarpon HOM05D000371 ORTHO05D003573 7.0e-18 95.1 66 63.6
Oeu028402.1 Olea europaea HOM05D000371 ORTHO05D003573 9.1e-18 94.7 69 59.4
BcaNung05544 Brassica carinata HOM05D000371 ORTHO05D003573 2.0e-17 93.6 75 56.0
HanXRQChr02g0041131 Helianthus annuus HOM05D000371 ORTHO05D003573 2.0e-17 93.6 63 68.3
CSS0002133 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D003573 2.6e-17 93.2 63 65.1
PSO133G0088 Papaver somniferum HOM05D000371 ORTHO05D003573 3.5e-17 92.8 69 59.4
PSO541G6279 Papaver somniferum HOM05D000371 ORTHO05D003573 3.5e-17 92.8 69 60.9
AL7G11910 Arabidopsis lyrata HOM05D000371 ORTHO05D003573 4.5e-17 92.4 72 56.9
Carub.0007s0159 Capsella rubella HOM05D000371 ORTHO05D003573 4.5e-17 92.4 72 58.3
ECA246G2647 Erigeron canadensis HOM05D000371 ORTHO05D003573 5.9e-17 92.0 70 62.9
Lsat_1_v5_gn_5_41561 Lactuca sativa HOM05D000371 ORTHO05D003573 5.9e-17 92.0 91 52.7
C01p00740 Brassica napus HOM05D000371 ORTHO05D003573 7.7e-17 91.7 69 59.4
BolC1t00076H Brassica oleracea HOM05D000371 ORTHO05D003573 7.7e-17 91.7 69 59.4
Duzib147G0218 Durio zibethinus HOM05D000371 ORTHO05D003573 7.7e-17 91.7 82 56.1
Thhalv10026198m.g Eutrema salsugineum HOM05D000371 ORTHO05D003573 7.7e-17 91.7 73 54.8
Lalb_Chr07g0184971 Lupinus albus HOM05D000371 ORTHO05D003573 1.0e-16 91.3 63 61.9
AT4G39710 Arabidopsis thaliana HOM05D000371 ORTHO05D003573 1.7e-16 90.5 72 55.6
BcaNung00893 Brassica carinata HOM05D000371 ORTHO05D003573 2.2e-16 90.1 66 60.6
Lj4A883G25 Lonicera japonica HOM05D000371 ORTHO05D003573 8.5e-16 88.2 62 64.5
Lj4C880G13 Lonicera japonica HOM05D000371 ORTHO05D003573 8.5e-16 88.2 62 64.5
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 1.1e-15 87.8 52 75.0
Ca_17712_v3 Cicer arietinum L. HOM05D000371 ORTHO05D003573 1.5e-15 87.4 69 58.0
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 1.5e-15 87.4 51 72.5
arahy.Tifrunner.gnm1.ann1.X3NPJM Arachis hypogaea HOM05D000371 ORTHO05D003573 1.9e-15 87.0 63 58.7
arahy.Tifrunner.gnm1.ann1.ZYU4S1 Arachis hypogaea HOM05D000371 ORTHO05D003573 1.9e-15 87.0 63 58.7
Sp7g36180 Schrenkiella parvula HOM05D000371 ORTHO05D003573 1.9e-15 87.0 69 55.1
Psat7g053080 Pisum sativum HOM05D000371 ORTHO05D003573 2.5e-15 86.7 62 62.9
Aa31LG6G15550 Aethionema arabicum HOM05D000371 ORTHO05D003573 4.2e-15 85.9 69 56.5
CARHR247010 Cardamine hirsuta HOM05D000371 ORTHO05D003573 7.2e-15 85.1 72 52.8
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 7.2e-15 85.1 51 68.6
PGR004G2425 Punica granatum HOM05D000371 ORTHO05D003573 9.4e-15 84.7 68 52.9
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 1.2e-14 84.3 81 50.6
SalBow5G1508 Salvia bowleyana HOM05D000371 ORTHO05D003573 1.2e-14 84.3 72 54.2
SalBow5G3726 Salvia bowleyana HOM05D000371 ORTHO05D003573 1.2e-14 84.3 72 54.2
Glyma.08G139100 Glycine max HOM05D000371 ORTHO05D003573 1.6e-14 84.0 63 55.6
ATR0564G254 Amborella trichopoda HOM05D000371 ORTHO05D003573 3.6e-14 82.8 83 51.8
Medtr8g091410 Medicago truncatula HOM05D000371 ORTHO05D003573 3.6e-14 82.8 69 55.1
DCAR_014246 Daucus carota HOM05D000371 ORTHO05D003573 6.1e-14 82.0 70 54.3
Phvul.002G262400 Phaseolus vulgaris HOM05D000371 ORTHO05D003573 6.1e-14 82.0 63 55.6
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 6.1e-14 82.0 51 68.6
VMungo0251G3192 Vigna mungo HOM05D000371 ORTHO05D003573 6.1e-14 82.0 63 55.6
Actinidia10887 Actinidia chinensis HOM05D000371 ORTHO05D003573 8.0e-14 81.6 68 63.2
Lj4g0009095 Lotus japonicus HOM05D000371 ORTHO05D003573 1.0e-13 81.3 66 51.5
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.8e-13 80.5 74 47.3
Migut.L00100 Erythranthe guttata HOM05D000371 ORTHO05D003573 2.3e-13 80.1 70 50.0
MSTRG.3797 Avicennia marina HOM05D000371 ORTHO05D003573 3.0e-13 79.7 74 51.4
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.0e-13 79.7 51 62.7
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 3.0e-13 79.7 51 64.7
unitig_747.g21822 Utricularia gibba HOM05D000371 ORTHO05D003573 3.0e-13 79.7 76 52.6
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 4.0e-13 79.3 52 71.2
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 4.0e-13 79.3 52 71.2
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 5.2e-13 79.0 50 64.0
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 6.7e-13 78.6 51 72.5
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.5e-12 77.4 49 67.3
TPR.G2221 Trifolium pratense HOM05D000371 ORTHO05D003573 2.0e-12 77.0 68 50.0
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.6e-12 76.6 51 60.8
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 2.6e-12 76.6 51 62.7
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 3.3e-12 76.3 63 50.8
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 5.7e-12 75.5 51 60.8
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 5.7e-12 75.5 51 60.8
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 5.7e-12 75.5 51 60.8
Aqoxy6G00548 Aquilegia oxysepala HOM05D000371 ORTHO05D003573 7.5e-12 75.1 54 59.3
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 9.7e-12 74.7 51 56.9
PSO541G3535 Papaver somniferum HOM05D000371 ORTHO05D003573 9.7e-12 74.7 77 46.8
EL10Ac6g15067 Beta vulgaris HOM05D000371 ORTHO05D003573 1.7e-11 73.9 62 56.5
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 1.7e-11 73.9 51 62.7
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 1.7e-11 73.9 52 61.5
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.2e-11 73.6 51 60.8
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 2.8e-11 73.2 44 70.5
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 3.7e-11 72.8 43 69.8
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 3.7e-11 72.8 50 60.0
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 3.7e-11 72.8 50 60.0
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 3.7e-11 72.8 55 56.4
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 8.2e-11 71.6 42 69.0
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 8.2e-11 71.6 51 60.8
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 8.2e-11 71.6 44 65.9
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 1.1e-10 71.2 51 54.9
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 1.8e-10 70.5 53 56.6
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 1.8e-10 70.5 42 66.7
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 1.8e-10 70.5 42 66.7
Zm00001eb255120 Zea mays HOM05D000371 ORTHO05D003573 1.8e-10 70.5 69 49.3
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 2.4e-10 70.1 46 60.9
Os02g0751600 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D003573 2.4e-10 70.1 69 49.3
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 3.1e-10 69.7 52 59.6
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 3.1e-10 69.7 50 60.0
AUR62003760 Chenopodium quinoa HOM05D000371 ORTHO05D003573 4.1e-10 69.3 79 44.3
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 4.1e-10 69.3 54 51.9
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 5.3e-10 68.9 44 65.9
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 5.3e-10 68.9 44 65.9
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 5.3e-10 68.9 44 65.9
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 5.3e-10 68.9 44 65.9
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 5.3e-10 68.9 44 65.9
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 5.3e-10 68.9 49 61.2
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 5.3e-10 68.9 150 30.7
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 7.0e-10 68.6 45 62.2
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 7.0e-10 68.6 45 64.4
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 1.2e-09 67.8 45 62.2
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 1.2e-09 67.8 50 54.0
AUR62002037 Chenopodium quinoa HOM05D000371 ORTHO05D003573 2.0e-09 67.0 79 44.3
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 3.5e-09 66.2 51 56.9
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 4.5e-09 65.9 82 41.5
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 4.5e-09 65.9 43 62.8
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 1.0e-08 64.7 71 40.8
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.7e-08 63.9 55 47.3
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 2.2e-08 63.5 49 59.2
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 2.9e-08 63.2 83 43.4
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 3.8e-08 62.8 44 59.1
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 3.8e-08 62.8 44 63.6
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 5.0e-08 62.4 46 56.5
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 5.0e-08 62.4 41 63.4
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 8.5e-08 61.6 46 54.3
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 8.5e-08 61.6 42 61.9
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 8.5e-08 61.6 44 61.4
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 1.1e-07 61.2 39 64.1
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.1e-07 61.2 44 61.4
Nn5g29005 Nelumbo nucifera HOM05D002551 ORTHO05D002832 1.6e-06 57.4 45 57.8
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 2.7e-06 56.6 54 42.6
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 3.6e-06 56.2 50 50.0
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 6.1e-06 55.5 38 57.9


User provided reference genes

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