Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 7.8e-164 580.5 311 100.0
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 4.2e-141 505.0 311 91.6
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 4.1e-96 355.5 306 68.6
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 1.2e-95 354.0 311 66.9
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 2.6e-95 352.8 331 61.6
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.6e-92 343.6 318 62.9
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 4.7e-92 342.0 323 61.9
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.0e-91 340.9 319 61.4
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 3.0e-91 339.3 324 61.4
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 6.7e-91 338.2 315 65.4
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 6.7e-91 338.2 318 60.1
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.1e-90 337.4 318 62.3
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 2.0e-90 336.7 313 62.9
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.3e-90 335.9 319 62.7
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 4.4e-90 335.5 319 61.4
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 9.7e-90 334.3 324 57.7
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.8e-89 332.0 309 59.5
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.4e-88 329.7 320 59.1
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 9.1e-88 327.8 326 62.6
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 9.1e-88 327.8 312 60.3
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.6e-87 327.0 235 70.6
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 3.5e-87 325.9 316 58.5
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 4.5e-87 325.5 221 73.8
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 4.5e-87 325.5 314 58.3
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 5.9e-87 325.1 221 74.2
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 5.9e-87 325.1 220 74.1
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 7.7e-87 324.7 317 59.6
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 6.5e-86 321.6 308 58.8
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 6.5e-86 321.6 317 58.7
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 8.5e-86 321.2 318 57.5
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 1.1e-85 320.9 228 70.6
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.9e-85 320.1 322 62.1
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.9e-85 320.1 322 58.7
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 3.2e-85 319.3 315 59.7
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 4.2e-85 318.9 316 56.6
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 5.5e-85 318.5 318 57.5
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 7.2e-85 318.2 312 58.7
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 9.4e-85 317.8 322 58.7
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.2e-84 317.4 323 55.1
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 1.6e-84 317.0 317 60.3
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 1.6e-84 317.0 317 58.4
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 2.1e-84 316.6 312 56.4
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.1e-84 316.6 325 56.6
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 4.7e-84 315.5 313 55.9
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 6.1e-84 315.1 236 69.1
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.1e-84 315.1 236 69.1
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.1e-84 315.1 236 69.1
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 8.0e-84 314.7 310 56.5
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 8.0e-84 314.7 309 56.6
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.3e-83 313.2 310 57.4
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.3e-83 313.2 228 70.2
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 3.0e-83 312.8 322 54.7
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 3.0e-83 312.8 314 56.1
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 4.0e-83 312.4 245 65.3
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 4.0e-83 312.4 315 56.2
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 6.8e-83 311.6 323 56.3
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 8.8e-83 311.2 176 84.1
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 8.8e-83 311.2 241 66.0
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.2e-82 310.8 312 54.8
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.2e-82 310.8 323 54.5
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 3.4e-82 309.3 317 59.9
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.4e-82 308.9 319 55.5
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 5.7e-82 308.5 324 54.6
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 7.5e-82 308.1 318 56.6
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.3e-81 307.4 311 60.5
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.7e-81 307.0 325 58.5
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.8e-81 306.2 324 54.9
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 2.8e-81 306.2 305 56.7
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.7e-81 305.8 341 55.7
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 4.8e-81 305.4 321 57.9
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 6.3e-81 305.1 317 54.6
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 8.3e-81 304.7 325 55.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 8.3e-81 304.7 325 55.1
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.1e-80 304.3 319 57.7
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.4e-80 303.9 224 68.8
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 2.4e-80 303.1 227 66.5
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 4.1e-80 302.4 313 57.5
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 9.1e-80 301.2 227 66.5
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 1.2e-79 300.8 313 54.6
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.6e-79 300.4 227 66.1
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.6e-79 300.4 284 58.8
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.0e-79 300.1 308 55.8
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 2.7e-79 299.7 313 54.6
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 2.7e-79 299.7 339 55.2
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 3.5e-79 299.3 307 54.7
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 3.5e-79 299.3 227 66.5
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 7.7e-79 298.1 232 63.4
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 1.0e-78 297.7 225 65.8
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.3e-78 297.4 246 61.8
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 1.3e-78 297.4 244 63.9
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.9e-78 296.2 226 65.9
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.5e-77 293.9 221 66.5
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.9e-77 293.5 313 54.3
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 4.2e-77 292.4 222 66.7
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 5.5e-77 292.0 221 66.1
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 5.5e-77 292.0 237 62.4
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 5.5e-77 292.0 222 65.8
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.6e-76 290.4 236 65.7
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 3.6e-76 289.3 329 52.0
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 1.8e-75 287.0 230 63.5
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 1.2e-74 284.3 218 67.0
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 2.0e-74 283.5 319 52.7
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 4.4e-74 282.3 299 58.5
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 2.8e-73 279.6 236 58.9
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 2.8e-73 279.6 176 73.9
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 2.8e-73 279.6 295 56.6
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 4.1e-72 275.8 289 57.1
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 2.1e-68 263.5 239 58.6
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 4.7e-68 262.3 219 57.1
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.3e-67 260.0 203 64.5
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 1.3e-65 254.2 229 59.8
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.1e-61 241.1 279 51.6
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.5e-58 230.7 259 53.7
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 6.4e-57 225.3 217 51.6
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 3.2e-56 223.0 338 47.3
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 6.6e-54 215.3 171 67.3
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 1.2e-52 211.1 214 49.1
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 4.4e-50 202.6 182 59.3
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 1.4e-48 197.6 238 45.0
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.1e-43 181.4 108 78.7
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 2.6e-42 176.8 144 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 3.7e-41 172.9 154 54.5
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 1.7e-33 147.5 83 81.9
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-33 147.1 83 83.1
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 7.1e-32 142.1 126 54.0
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 4.8e-28 129.4 168 45.2
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 2.4e-27 127.1 80 76.2
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 6.9e-27 125.6 172 39.0
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 2.0e-26 124.0 68 83.8
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 2.4e-24 117.1 150 36.7
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 5.4e-24 115.9 134 51.5
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 2.4e-19 100.5 207 31.9
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 4.9e-17 92.8 132 41.7
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.4e-16 91.3 56 76.8
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 1.1e-11 75.1 83 49.4
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 6.5e-09 65.9 31 93.5
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 4.6e-07 59.7 28 92.9


User provided reference genes

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