Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 4.1e-173 611.3 306 100.0
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 1.1e-130 470.3 309 76.4
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 1.2e-127 460.3 309 75.1
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 3.7e-126 455.3 307 75.2
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 4.9e-126 454.9 309 74.8
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 6.3e-126 454.5 307 73.0
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.1e-125 453.8 309 74.4
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.8e-125 453.0 309 74.4
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 2.4e-125 452.6 309 72.8
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 1.2e-124 450.3 309 72.5
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.6e-124 449.9 309 74.1
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.6e-124 449.9 309 74.1
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 2.0e-124 449.5 320 73.1
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 6.6e-123 444.5 309 72.5
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 1.9e-122 443.0 309 70.6
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 2.1e-121 439.5 309 69.9
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 2.1e-121 439.5 308 71.8
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.8e-121 439.1 309 72.8
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 2.8e-121 439.1 309 70.6
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 4.7e-121 438.3 309 71.5
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 1.4e-120 436.8 309 69.6
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 4.0e-120 435.3 307 70.0
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 6.8e-120 434.5 307 70.0
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 9.8e-119 430.6 307 69.7
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 1.7e-118 429.9 307 70.0
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 2.2e-118 429.5 307 68.7
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.1e-117 427.2 307 68.1
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 1.4e-117 426.8 307 68.4
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 9.2e-117 424.1 309 68.6
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 1.0e-115 420.6 307 66.8
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 1.6e-113 413.3 309 65.7
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 2.1e-113 412.9 308 67.2
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 4.7e-113 411.8 429 54.3
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 6.2e-113 411.4 309 67.0
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 6.8e-112 407.9 306 68.0
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 6.8e-112 407.9 306 68.0
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 6.8e-112 407.9 307 65.8
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 1.2e-111 407.1 307 65.1
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 1.5e-111 406.8 307 65.8
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 2.0e-111 406.4 309 66.0
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 2.0e-111 406.4 309 65.4
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 4.4e-111 405.2 309 66.0
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 3.7e-110 402.1 307 63.8
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 3.7e-110 402.1 309 65.7
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 6.4e-110 401.4 307 65.5
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 8.3e-110 401.0 308 64.0
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 4.1e-109 398.7 273 74.7
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 9.2e-109 397.5 307 62.2
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 9.2e-109 397.5 307 61.9
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 1.6e-108 396.7 307 61.2
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 1.7e-107 393.3 311 64.3
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 2.3e-107 392.9 309 63.4
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 1.9e-106 389.8 307 62.2
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 5.6e-106 388.3 305 62.0
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 9.5e-106 387.5 308 63.0
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.8e-104 383.3 353 57.2
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 8.9e-104 380.9 306 60.8
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 2.6e-103 379.4 351 58.4
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 3.4e-103 379.0 307 59.6
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 7.5e-103 377.9 309 59.9
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 6.4e-102 374.8 306 60.1
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 1.4e-101 373.6 359 55.4
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 1.9e-101 373.2 306 60.1
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 9.2e-101 370.9 293 61.4
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 1.2e-100 370.5 306 60.1
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.3e-99 367.1 309 59.2
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 3.9e-99 365.5 309 58.3
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 2.6e-95 352.8 308 58.8
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 1.6e-92 343.6 294 58.2
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 2.3e-91 339.7 313 54.0
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 3.3e-90 335.9 303 56.8
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 7.3e-90 334.7 307 54.1
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 2.1e-89 333.2 307 53.7
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 2.1e-89 333.2 307 53.7
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 8.1e-89 331.3 304 54.6
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 8.1e-89 331.3 307 53.7
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 1.1e-88 330.9 306 55.2
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 6.9e-88 328.2 298 59.7
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 1.3e-86 323.9 237 67.9
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 1.7e-86 323.6 307 51.8
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 1.7e-86 323.6 307 51.5
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 1.1e-85 320.9 307 51.8
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 2.4e-85 319.7 234 65.8
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 5.4e-85 318.5 290 54.5
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 2.7e-84 316.2 292 53.8
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 2.7e-84 316.2 307 51.5
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 6.0e-84 315.1 306 54.6
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 1.0e-83 314.3 243 67.9
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.5e-82 310.5 268 60.1
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.5e-82 309.7 268 60.1
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 2.1e-81 306.6 250 62.4
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 1.1e-80 304.3 325 51.4
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 5.3e-80 302.0 300 51.3
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 1.2e-76 290.8 222 63.1
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 1.1e-74 284.3 238 58.8
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.4e-72 277.3 302 46.4
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 6.9e-72 275.0 219 65.3
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 2.0e-71 273.5 178 75.3
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 1.3e-67 260.8 292 43.8
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 4.8e-65 252.3 231 57.6
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 1.2e-60 237.7 241 50.6
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 1.2e-52 211.1 307 42.3
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 1.7e-49 200.7 293 36.9
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 4.2e-45 186.0 114 75.4
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 8.8e-35 151.8 280 29.3
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 7.0e-32 142.1 113 60.2
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.4e-24 117.1 67 77.6
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 4.1e-24 116.3 67 77.6
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 5.4e-24 115.9 64 79.7
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 4.5e-23 112.8 67 70.1
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 1.1e-21 108.2 63 71.4
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 1.4e-08 64.7 62 53.2


User provided reference genes

Program Settings