Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.3e-99 365.5 185 100.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 3.1e-67 258.8 137 96.4
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 5.8e-66 254.6 136 94.9
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-64 250.4 134 94.8
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 5.5e-56 221.5 135 83.0
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 9.3e-56 220.7 135 84.4
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.7e-55 219.2 135 83.0
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 6.0e-55 218.0 135 83.0
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 6.0e-55 218.0 135 83.0
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 7.9e-55 217.6 135 81.5
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 7.9e-55 217.6 135 81.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.3e-54 216.9 135 82.2
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.3e-54 216.1 135 81.5
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.9e-54 215.3 135 81.5
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.7e-54 214.5 135 81.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.1e-53 213.8 138 81.9
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.9e-53 213.0 135 80.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.3e-53 212.2 135 80.7
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 2.8e-52 209.1 135 81.5
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 3.7e-52 208.8 135 80.0
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 4.8e-52 208.4 134 79.9
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 6.3e-52 208.0 134 75.4
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 8.2e-52 207.6 135 80.0
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 8.2e-52 207.6 135 80.0
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.1e-51 207.2 135 80.7
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.4e-51 206.8 137 78.1
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.4e-51 206.8 135 79.3
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.4e-51 206.8 135 77.0
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.8e-51 206.5 135 80.7
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 4.1e-51 205.3 134 78.4
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 5.3e-51 204.9 135 79.3
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.3e-51 204.9 135 76.3
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 6.9e-51 204.5 135 78.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 9.0e-51 204.1 134 77.6
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 9.0e-51 204.1 135 80.0
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.2e-50 203.8 135 79.3
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.2e-50 203.8 134 76.9
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-50 203.0 135 79.3
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.0e-50 203.0 132 76.5
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 2.0e-50 203.0 135 77.8
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 3.4e-50 202.2 135 78.5
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 4.5e-50 201.8 134 76.1
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 5.9e-50 201.4 135 78.5
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 7.6e-50 201.1 135 76.3
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.0e-49 200.7 135 77.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.0e-49 200.7 134 75.4
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.3e-49 200.3 135 77.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.7e-49 199.9 135 76.3
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.7e-49 199.9 134 75.4
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 2.9e-49 199.1 135 75.6
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.9e-49 199.1 134 73.9
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.8e-49 198.7 135 76.3
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 5.0e-49 198.4 162 69.1
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.0e-49 198.4 134 74.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 6.5e-49 198.0 135 78.5
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 8.5e-49 197.6 135 75.6
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.1e-48 197.2 135 74.8
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.5e-48 196.1 135 73.3
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 2.5e-48 196.1 135 74.8
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 5.5e-48 194.9 135 74.1
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.2e-48 194.5 135 73.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 4.6e-47 191.8 136 72.1
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.1e-47 191.4 138 71.0
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.0e-46 190.7 135 71.1
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.0e-46 190.7 135 71.9
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.0e-46 190.7 135 72.6
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.3e-46 190.3 134 70.9
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 3.0e-46 189.1 135 71.9
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 3.0e-46 189.1 135 71.9
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 3.0e-46 189.1 183 60.7
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 3.9e-46 188.7 143 70.6
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 6.7e-46 188.0 134 70.9
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 6.7e-46 188.0 135 69.6
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 8.7e-46 187.6 136 72.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 8.7e-46 187.6 134 70.1
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.5e-45 186.8 143 69.9
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.5e-45 186.0 135 68.9
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 3.3e-45 185.7 135 71.1
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.3e-45 185.7 136 69.9
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.3e-44 183.7 132 71.2
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.3e-44 183.7 134 71.6
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.8e-44 182.6 135 68.9
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.7e-44 182.2 133 70.7
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 3.7e-44 182.2 133 70.7
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 6.3e-44 181.4 135 68.9
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.1e-43 180.6 134 68.7
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.4e-43 180.3 135 67.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 3.1e-43 179.1 150 65.3
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 3.1e-43 179.1 157 61.8
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.3e-43 178.3 134 67.9
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 6.9e-43 177.9 135 66.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.9e-43 177.9 138 68.1
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.5e-42 176.8 134 69.4
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 4.5e-42 175.3 167 59.3
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.9e-41 172.6 126 69.8
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.9e-41 172.6 126 69.8
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.5e-41 171.4 135 70.4
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-40 170.2 122 73.0
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.4e-40 170.2 134 66.4
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.4e-40 170.2 134 64.9
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.9e-40 169.9 134 65.7
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 9.4e-40 167.5 165 58.8
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 6.1e-39 164.9 135 68.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.0e-38 164.1 135 66.7
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.0e-38 164.1 135 66.7
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.4e-38 163.7 133 62.4
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.3e-38 162.9 130 64.6
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 4.8e-36 155.2 137 61.3
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.5e-34 150.2 134 62.7
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 2.0e-34 149.8 134 61.9
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 5.9e-34 148.3 137 59.9
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.0e-33 147.5 100 75.0
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.3e-33 147.1 176 48.3
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.7e-33 146.7 135 60.0
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.2e-32 142.1 100 74.0
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.6e-31 140.2 104 70.2
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.4e-30 137.1 134 57.5
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.2e-28 129.8 142 53.5
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 2.6e-26 122.9 141 53.2
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 4.7e-23 112.1 80 75.0
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.5e-21 107.1 80 66.2
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.5e-21 107.1 78 71.8
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.5e-21 107.1 139 44.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.3e-20 104.0 136 44.1
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 3.7e-20 102.4 88 60.2
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.4e-19 99.8 130 45.4
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 5.3e-19 98.6 64 75.0
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.7e-17 93.6 112 46.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 5.5e-16 88.6 64 68.8
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 2.1e-15 86.7 106 49.1
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 6.1e-15 85.1 88 54.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.4e-14 84.0 112 41.1
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 7.7e-10 68.2 94 45.7
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.0e-09 67.8 36 88.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 3.8e-09 65.9 36 86.1
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 8.6e-09 64.7 36 80.6
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 9.5e-08 61.2 36 72.2
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.6e-07 60.5 36 75.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.8e-07 59.7 36 77.8
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.8e-07 59.7 52 53.8
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 4.7e-07 58.9 36 69.4
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 5.2e-06 55.5 37 64.9
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 8.8e-06 54.7 36 72.2


User provided reference genes

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