Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 0.0e+00 2127.1 1235 100.0
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 0.0e+00 1102.4 1222 59.8
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 3.3e-306 1055.4 1201 59.3
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 8.4e-302 1040.8 1195 57.7
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 5.6e-298 1028.1 1192 57.4
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 4.4e-295 1018.5 1260 56.0
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.5e-290 1003.4 1201 55.8
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.3e-290 1001.9 1200 55.9
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 7.3e-290 1001.1 1201 56.0
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.4e-288 996.1 1188 56.0
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 1.0e-283 980.7 1255 55.3
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 2.2e-270 936.4 1201 53.6
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 2.5e-269 932.9 1277 53.6
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 6.7e-267 924.9 1264 53.3
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 4.3e-266 922.2 1212 52.6
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.1e-264 915.6 1348 48.7
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 2.5e-258 896.3 1259 52.4
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.8e-257 892.9 1265 53.5
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.4e-256 890.6 1204 53.3
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 1.8e-256 890.2 1240 51.4
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 5.0e-254 882.1 1200 52.0
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.8e-251 873.6 1267 52.7
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 8.8e-251 871.3 1264 52.8
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 1.5e-250 870.5 1200 52.0
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.4e-248 864.0 1229 51.3
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 3.1e-248 862.8 1253 50.7
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.5e-245 854.0 1205 51.5
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 3.2e-245 852.8 1257 51.1
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 3.6e-244 849.4 1201 51.2
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.0e-243 847.8 1256 50.7
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 6.7e-243 845.1 1236 50.9
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 3.7e-241 839.3 1249 49.8
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 2.6e-239 833.2 1190 49.7
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.2e-238 830.1 1187 50.2
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.6e-236 823.9 1201 50.2
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 4.4e-234 815.8 1225 49.5
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.8e-232 810.4 1201 48.4
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 2.0e-231 807.0 1259 49.2
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.1e-229 801.2 1210 50.2
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.5e-226 790.8 1219 49.9
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 6.3e-225 785.4 1262 50.1
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.0e-222 778.1 1161 50.4
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.3e-222 777.7 1294 47.8
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.7e-222 777.3 1224 48.8
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 2.9e-222 776.5 1197 47.7
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 6.6e-222 775.4 1237 48.0
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 3.3e-221 773.1 1190 47.3
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 9.5e-221 771.5 1256 44.3
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 2.4e-216 756.9 1237 45.4
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 5.8e-210 735.7 1189 45.8
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 1.5e-205 721.1 1269 42.8
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.5e-202 711.1 1193 47.4
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 5.4e-200 702.6 1193 48.4
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.0e-190 671.8 1206 44.9
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.9e-185 652.9 1066 48.3
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 3.2e-184 650.2 1101 45.6
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 5.4e-184 649.4 1198 45.2
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.3e-182 644.8 1305 40.8
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.4e-179 634.0 1278 44.1
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 7.6e-178 629.0 1274 44.3
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 9.3e-176 622.1 1221 45.0
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 3.5e-175 620.2 1221 44.6
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.1e-173 615.1 1055 45.1
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 6.2e-172 609.4 1183 44.3
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.4e-171 607.4 1195 43.6
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 3.4e-170 603.6 1207 42.9
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 7.6e-170 602.4 1257 44.0
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 4.3e-165 586.6 1180 44.2
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 7.4e-165 585.9 1303 38.8
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 5.3e-163 579.7 1208 42.9
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 6.9e-155 552.7 1229 40.6
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 4.2e-152 543.5 1206 38.5
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 4.2e-152 543.5 1200 42.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 2.1e-151 541.2 1222 39.4
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 8.7e-150 535.8 1218 39.1
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 3.3e-149 533.9 1197 38.9
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 9.7e-149 532.3 1203 40.9
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 8.2e-148 529.3 1178 38.8
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 3.1e-147 527.3 1036 45.1
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 2.0e-146 524.6 1193 41.3
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.9e-145 520.8 869 50.6
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 5.5e-144 516.5 1213 39.2
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 3.0e-142 510.8 1227 37.5
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 8.8e-142 509.2 1192 37.9
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 9.7e-141 505.8 1235 42.5
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 4.1e-139 500.4 1184 40.2
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 2.1e-135 488.0 1186 38.3
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 3.0e-134 484.2 1185 38.1
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 3.3e-133 480.7 1184 38.3
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 3.3e-133 480.7 1188 38.2
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 3.3e-133 480.7 1184 38.3
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 5.0e-129 466.8 1183 37.7
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 5.5e-128 463.4 577 52.5
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.2e-127 462.2 1142 40.2
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.0e-126 459.1 1035 37.0
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.8e-126 458.4 1245 38.4
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.0e-126 457.2 1214 34.4
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.8e-123 448.4 1203 39.1
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 3.1e-115 421.0 1239 36.6
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 3.6e-111 407.5 1175 37.3
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.1e-107 394.4 911 35.8
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 9.2e-99 366.3 1051 37.3
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.2e-93 349.4 1068 31.1
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 1.9e-91 342.0 757 37.9
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 5.4e-91 340.5 1251 33.8
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 6.0e-90 337.0 1205 32.4
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 8.1e-87 326.6 1251 33.7
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 3.4e-85 321.2 1117 31.6
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.3e-81 309.3 1297 32.4
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 2.3e-81 308.5 1205 29.7
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 8.6e-81 306.6 353 50.1
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.7e-71 274.2 324 56.8
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.4e-70 272.7 1265 31.8
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.4e-70 272.7 1069 33.2
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 3.1e-70 271.6 342 51.2
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 4.2e-67 261.2 1046 33.4
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 3.6e-63 248.1 274 54.7
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 7.4e-48 197.2 140 69.3
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.8e-47 195.3 418 37.6
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.8e-46 192.6 150 66.7
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 1.1e-43 183.3 378 35.4
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 6.7e-41 174.1 214 47.7
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 7.4e-40 170.6 344 33.7
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 1.9e-35 156.0 467 34.9
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 2.1e-34 152.5 123 66.7
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 1.0e-33 150.2 139 60.4
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 8.7e-33 147.1 442 31.2
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 3.4e-29 135.2 158 50.6
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 4.5e-29 134.8 105 59.0
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.9e-28 132.1 263 38.4
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 1.0e-25 123.6 1302 26.5
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.0e-25 123.6 166 44.0
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.0e-25 123.6 184 40.2
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 5.0e-20 104.8 141 41.8
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 2.5e-19 102.4 60 80.0
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 8.2e-15 87.4 130 60.8
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 9.1e-14 84.0 128 50.0
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 4.5e-13 81.6 710 33.4
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 4.5e-13 81.6 78 51.3
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 6.5e-12 77.8 223 32.7
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 1.6e-10 73.2 69 60.9
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 3.6e-10 72.0 122 46.7
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 8.8e-09 67.4 55 61.8
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 3.3e-08 65.5 138 34.8
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 2.4e-06 59.3 290 30.0
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 2.4e-06 59.3 42 66.7
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 9.1e-06 57.4 134 35.8


User provided reference genes

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