Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 1.8e-38 162.9 141 100.0
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 3.3e-37 158.7 141 93.6
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 1.7e-25 119.8 77 79.2
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 1.7e-25 119.8 81 79.0
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 1.9e-24 116.3 83 75.9
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 1.9e-24 116.3 77 80.5
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 2.5e-24 115.9 85 71.8
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 7.2e-24 114.4 82 75.6
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.2e-23 113.6 81 71.6
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 2.7e-23 112.5 78 78.2
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 2.7e-23 112.5 82 73.2
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 6.1e-23 111.3 83 72.3
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 1.4e-22 110.2 81 69.1
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 1.4e-22 110.2 79 72.2
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 1.8e-22 109.8 80 76.2
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.8e-22 109.8 80 76.2
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.8e-22 109.8 80 76.2
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 1.8e-22 109.8 81 74.1
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.3e-22 109.4 80 75.0
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 3.0e-22 109.0 79 74.7
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 3.0e-22 109.0 85 69.4
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 5.1e-22 108.2 81 69.1
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 5.1e-22 108.2 77 72.7
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 5.1e-22 108.2 77 72.7
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 5.1e-22 108.2 79 72.2
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 5.1e-22 108.2 79 72.2
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 6.7e-22 107.8 84 71.4
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 8.8e-22 107.5 77 75.3
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 1.1e-21 107.1 82 72.0
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 1.5e-21 106.7 88 70.5
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 1.5e-21 106.7 88 70.5
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 1.5e-21 106.7 88 70.5
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 1.5e-21 106.7 85 65.9
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 2.0e-21 106.3 77 72.7
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 2.0e-21 106.3 85 67.1
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 3.3e-21 105.5 76 73.7
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 4.4e-21 105.1 79 72.2
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 5.7e-21 104.8 77 70.1
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 7.4e-21 104.4 83 65.1
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.3e-20 103.6 79 70.9
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 1.7e-20 103.2 77 67.5
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 2.2e-20 102.8 79 69.6
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 2.8e-20 102.4 84 66.7
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 2.8e-20 102.4 79 69.6
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 3.7e-20 102.1 83 67.5
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 3.7e-20 102.1 83 67.5
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 3.7e-20 102.1 82 61.0
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 4.8e-20 101.7 82 68.3
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 4.8e-20 101.7 85 65.9
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 4.8e-20 101.7 76 71.1
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 6.3e-20 101.3 82 65.9
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 6.3e-20 101.3 78 66.7
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 6.3e-20 101.3 83 60.2
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 6.3e-20 101.3 79 67.1
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 6.3e-20 101.3 80 67.5
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 8.2e-20 100.9 79 68.4
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 8.2e-20 100.9 79 68.4
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 1.4e-19 100.1 78 65.4
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 1.4e-19 100.1 78 64.1
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 1.8e-19 99.8 85 65.9
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 1.8e-19 99.8 77 70.1
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 1.8e-19 99.8 82 67.1
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 2.4e-19 99.4 83 60.2
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 3.1e-19 99.0 78 67.9
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 4.1e-19 98.6 82 64.6
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 6.9e-19 97.8 84 66.7
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 6.9e-19 97.8 84 66.7
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 6.9e-19 97.8 84 66.7
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 6.9e-19 97.8 84 63.1
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 6.9e-19 97.8 78 69.2
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 9.1e-19 97.4 78 71.8
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 1.2e-18 97.1 85 65.9
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 1.2e-18 97.1 85 65.9
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 1.2e-18 97.1 77 64.9
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 1.5e-18 96.7 78 61.5
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 2.0e-18 96.3 75 69.3
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 2.6e-18 95.9 83 62.7
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 3.4e-18 95.5 84 64.3
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 5.9e-18 94.7 85 63.5
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 5.9e-18 94.7 85 63.5
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 7.7e-18 94.4 83 62.7
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 7.7e-18 94.4 77 66.2
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 1.0e-17 94.0 83 63.9
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 1.3e-17 93.6 83 61.4
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 1.3e-17 93.6 83 62.7
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 1.3e-17 93.6 83 62.7
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 1.3e-17 93.6 84 64.3
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 2.2e-17 92.8 83 61.4
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 2.2e-17 92.8 77 63.6
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 2.9e-17 92.4 84 61.9
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 2.9e-17 92.4 84 61.9
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 2.9e-17 92.4 83 59.0
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 3.8e-17 92.0 85 60.0
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 5.0e-17 91.7 84 61.9
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 8.5e-17 90.9 79 62.0
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 7.2e-16 87.8 109 50.5
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 2.1e-15 86.3 86 59.3
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 2.1e-15 86.3 84 58.3
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 1.4e-14 83.6 70 64.3
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.4e-14 83.6 76 59.2
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 8.8e-14 80.9 63 68.3
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 1.3e-12 77.0 76 56.6
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.7e-12 76.6 76 56.6
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 2.6e-10 69.3 80 50.0
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 3.5e-10 68.9 89 47.2
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 1.7e-09 66.6 83 50.6
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 5.0e-09 65.1 76 51.3
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 1.2e-07 60.5 85 49.4
Pp3c4_15620 Physcomitrium patens HOM05D007045 ORTHO05D008872 1.8e-06 56.6 102 44.1
Pp3c13_5290 Physcomitrium patens HOM05D007045 ORTHO05D008872 5.2e-06 55.1 88 43.2


User provided reference genes

Program Settings