Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 5.3e-176 620.9 314 100.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 9.1e-128 460.7 315 75.9
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.3e-126 456.8 315 75.2
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 5.5e-125 451.4 315 75.6
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 6.1e-124 448.0 317 73.8
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 4.4e-122 441.8 308 75.3
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 9.4e-117 424.1 315 72.1
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 9.4e-117 424.1 315 71.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.0e-115 420.6 312 70.5
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.3e-115 419.5 318 71.1
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.3e-115 419.5 316 70.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.3e-115 419.5 312 70.5
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 4.0e-115 418.7 318 71.1
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.0e-115 418.7 316 69.0
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 6.8e-115 417.9 318 71.4
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.2e-114 417.2 318 71.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.7e-114 414.8 315 70.5
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.3e-113 413.7 318 70.4
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.8e-113 412.5 317 70.7
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.8e-113 411.8 315 69.8
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.1e-112 410.6 316 69.3
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.4e-112 409.5 315 70.2
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 5.4e-112 408.3 316 70.6
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 5.4e-112 408.3 313 69.0
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.4e-112 408.3 313 68.7
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 2.0e-111 406.4 312 69.2
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.9e-110 402.5 347 64.3
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.5e-109 399.4 316 69.3
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 2.5e-109 399.4 317 68.8
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 3.2e-109 399.1 314 68.2
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 5.5e-109 398.3 316 68.7
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.1e-108 396.4 314 66.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.1e-108 396.4 313 67.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-107 393.3 314 67.5
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 3.0e-107 392.5 313 68.1
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 4.0e-107 392.1 313 66.8
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.0e-106 389.8 316 66.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.6e-106 389.4 316 65.8
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.4e-106 388.7 312 65.1
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 5.7e-106 388.3 316 68.0
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.7e-105 386.7 316 67.7
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-105 386.3 316 67.4
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 4.9e-105 385.2 315 63.2
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 8.3e-105 384.4 315 66.7
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.4e-104 383.6 318 66.7
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 2.4e-104 382.9 315 66.3
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 7.0e-104 381.3 338 61.5
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.2e-103 380.6 313 64.5
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.7e-103 379.4 329 63.8
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.7e-103 379.4 317 65.9
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 7.7e-103 377.9 313 66.8
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.3e-102 377.1 316 63.6
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.3e-102 376.3 315 64.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 8.6e-102 374.4 315 62.5
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.9e-101 373.2 315 64.1
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.3e-101 372.5 314 64.3
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 4.3e-101 372.1 314 62.1
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 5.6e-101 371.7 312 64.4
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 9.5e-101 370.9 315 64.1
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.6e-100 370.2 316 63.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 6.1e-100 368.2 313 64.9
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.4e-99 367.1 313 63.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.8e-99 366.7 320 63.1
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.0e-99 365.5 313 63.3
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 4.0e-99 365.5 314 62.1
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 6.8e-99 364.8 315 62.2
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 6.8e-99 364.8 315 62.9
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 9.8e-98 360.9 322 63.0
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.7e-97 359.0 318 61.9
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 4.9e-97 358.6 315 63.5
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 8.3e-97 357.8 316 63.6
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 8.3e-97 357.8 322 61.8
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 8.3e-97 357.8 261 72.8
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 3.2e-96 355.9 324 62.7
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 7.0e-96 354.8 318 61.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-95 354.0 315 64.1
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 3.5e-95 352.4 314 60.2
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 8.6e-94 347.8 318 60.7
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.1e-93 347.4 328 60.4
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.3e-93 345.5 327 59.6
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 5.6e-93 345.1 313 60.1
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 5.6e-93 345.1 318 61.6
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.8e-92 342.8 323 58.5
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.8e-92 342.8 328 59.5
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 4.7e-92 342.0 361 56.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 4.7e-92 342.0 361 56.8
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 6.2e-92 341.7 315 59.0
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.8e-91 340.1 316 61.7
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 5.2e-91 338.6 270 67.4
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 8.9e-91 337.8 285 63.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.5e-90 337.0 268 64.9
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.5e-90 337.0 265 68.7
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.6e-90 336.3 324 58.0
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.4e-88 330.5 278 63.3
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.4e-88 329.7 347 56.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.2e-88 329.3 314 58.3
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 6.6e-86 321.6 314 58.0
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 8.6e-86 321.2 290 60.3
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 9.5e-85 317.8 284 59.5
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.2e-84 317.4 236 72.5
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 8.1e-84 314.7 355 54.6
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 8.1e-84 314.7 355 54.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.4e-83 313.9 316 57.0
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.6e-82 309.7 249 65.5
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.3e-81 307.4 289 58.8
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-81 307.0 266 63.2
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 4.9e-81 305.4 333 55.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.2e-79 300.8 237 67.9
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 6.0e-79 298.5 245 66.1
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.5e-77 293.9 296 58.8
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.2e-76 290.8 236 68.6
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.6e-76 290.4 305 58.7
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 8.9e-75 284.6 220 66.4
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.2e-73 280.0 260 59.2
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 6.4e-73 278.5 218 65.6
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.1e-72 277.7 259 57.5
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.4e-67 260.0 236 59.7
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 5.2e-67 258.8 245 62.0
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 8.9e-67 258.1 236 59.3
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-64 250.8 236 62.3
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.4e-64 250.8 236 62.3
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.0e-62 244.6 247 55.1
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 7.3e-61 238.4 237 56.5
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 9.6e-61 238.0 234 57.3
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-59 234.6 152 77.0
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 3.1e-59 233.0 194 62.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 5.3e-59 232.3 240 56.7
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-59 232.3 206 61.7
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.7e-57 227.3 239 56.9
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 3.2e-56 223.0 300 46.0
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-51 206.5 162 72.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.4e-50 203.0 234 49.6
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.9e-49 199.9 249 50.2
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.4e-48 196.8 248 51.2
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.2e-48 196.4 171 61.4
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.7e-47 193.4 296 41.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.8e-44 183.3 247 48.2
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.8e-44 183.3 334 38.3
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.6e-42 176.8 146 60.3
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-38 164.1 148 59.5
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 7.4e-37 158.7 315 35.9
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.6e-36 157.5 237 41.4
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.8e-33 146.4 170 54.7
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.1e-31 139.0 154 53.9
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 5.1e-30 136.0 168 46.4
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-29 133.3 79 77.2
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.1e-27 128.3 130 56.2
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.1e-24 118.2 78 69.2
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.4e-24 117.9 78 67.9
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.9e-22 109.8 97 61.9
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 3.3e-21 106.7 339 28.3
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 7.7e-18 95.5 64 68.8
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.4e-14 84.7 55 70.9
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.7e-14 82.4 89 53.9
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 2.6e-13 80.5 78 60.3
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 4.1e-11 73.2 53 71.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 4.1e-11 73.2 52 73.1
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 3.6e-07 60.1 104 35.6


User provided reference genes

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