Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 4.2e-274 947.6 533 100.0
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.3e-150 537.3 539 53.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.1e-141 507.7 539 51.0
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 8.2e-137 491.5 521 51.6
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.6e-135 486.5 542 49.8
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.6e-132 477.2 538 48.9
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 5.7e-130 468.8 441 56.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.4e-123 447.6 544 46.5
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.3e-118 431.0 514 46.9
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.1e-116 423.7 539 45.3
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.0e-115 421.4 550 44.5
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 6.7e-115 418.7 529 44.0
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.4e-114 416.0 544 45.6
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 7.4e-114 415.2 535 46.5
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.4e-112 410.2 530 45.1
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.5e-111 406.4 452 49.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.9e-111 405.6 461 48.6
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.0e-110 404.8 423 51.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.7e-110 404.1 420 51.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 3.2e-109 399.8 434 50.7
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.5e-109 399.1 544 43.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.5e-109 399.1 544 43.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.4e-109 398.3 454 49.1
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.2e-108 397.9 540 45.4
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.1e-108 395.6 532 48.9
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.8e-107 394.0 522 45.0
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 6.7e-107 392.1 553 42.1
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.1e-106 391.3 487 46.0
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.1e-106 391.3 439 50.3
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 5.7e-106 389.0 526 44.7
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 9.7e-106 388.3 493 46.5
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.6e-103 380.2 453 49.0
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 3.5e-103 379.8 530 43.2
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 7.7e-103 378.6 529 42.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.2e-101 372.9 436 47.7
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.7e-100 370.2 526 43.3
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.7e-100 370.2 456 46.3
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.4e-99 367.9 437 46.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 5.2e-99 365.9 522 42.3
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.5e-98 362.1 525 42.3
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.2e-95 354.8 525 41.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.0e-94 351.7 538 40.3
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 2.9e-94 350.1 528 42.2
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.8e-94 349.7 523 39.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 6.5e-94 349.0 525 40.0
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.5e-93 347.1 536 40.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.2e-93 346.7 536 40.3
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 4.2e-93 346.3 546 39.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 5.5e-93 345.9 524 40.6
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.0e-87 327.4 531 38.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.5e-87 326.6 437 43.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 4.5e-87 326.2 498 41.0
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 8.6e-86 322.0 543 38.5
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 5.5e-85 319.3 553 39.2
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.1e-84 317.4 480 38.3
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 8.9e-83 312.0 534 38.2
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 6.3e-81 305.8 460 42.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.6e-79 301.2 454 41.0
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.9e-78 296.6 509 38.1
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.8e-76 290.4 458 39.1
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.0e-75 288.5 534 35.2
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.6e-74 283.9 522 37.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 4.4e-74 283.1 533 34.1
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.5e-74 282.3 452 38.7
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.7e-70 271.2 523 34.8
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.0e-70 270.4 526 34.4
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.9e-70 270.0 517 34.8
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.5e-69 268.1 517 34.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.5e-69 267.3 396 42.4
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 9.5e-69 265.4 435 41.4
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.1e-68 264.2 523 34.2
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.8e-67 261.2 483 36.9
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 3.1e-67 260.4 519 35.1
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 3.1e-67 260.4 488 36.7
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.8e-67 259.2 417 40.8
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 6.8e-67 259.2 450 36.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.0e-66 257.7 462 36.4
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.4e-66 256.9 424 38.4
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.9e-65 253.8 299 46.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 8.3e-65 252.3 271 48.3
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.4e-64 251.5 534 33.7
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.4e-64 251.5 520 34.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.4e-64 250.8 435 36.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 3.2e-64 250.4 267 48.7
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 7.1e-64 249.2 428 37.1
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.6e-63 248.1 420 39.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.7e-62 244.6 375 39.2
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 8.6e-62 242.3 460 35.2
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-61 241.1 405 37.0
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 4.3e-61 240.0 275 48.4
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-60 237.7 424 36.1
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.6e-60 236.9 365 38.9
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 6.2e-60 236.1 413 35.4
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 6.2e-60 236.1 389 38.0
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 8.1e-60 235.7 240 52.5
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.8e-59 234.6 390 35.6
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 8.9e-59 232.3 516 32.6
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.9e-58 228.8 404 36.9
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-57 228.0 430 33.3
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.2e-57 227.6 282 44.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.9e-57 227.3 416 35.3
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.7e-57 226.9 404 36.1
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 4.9e-57 226.5 448 33.0
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 8.4e-57 225.7 438 34.0
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.4e-56 224.9 410 35.1
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.4e-56 224.9 416 34.6
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 9.2e-56 222.2 413 37.0
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.6e-55 221.5 447 34.5
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 3.5e-55 220.3 438 34.2
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 7.8e-55 219.2 437 34.1
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.0e-54 217.2 400 34.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.6e-54 216.1 460 33.0
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 8.6e-54 215.7 274 46.0
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.5e-53 214.9 395 33.2
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 7.3e-53 212.6 461 30.8
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.2e-52 211.8 451 33.3
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.1e-52 211.1 454 32.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.1e-52 211.1 454 32.8
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.8e-52 210.7 355 38.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.8e-52 210.7 367 36.8
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 6.8e-51 206.1 286 39.5
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 6.8e-51 206.1 503 33.2
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 4.4e-50 203.4 492 31.3
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 7.6e-50 202.6 405 34.3
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 7.6e-50 202.6 473 32.8
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.2e-49 201.1 445 33.5
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.4e-48 197.6 471 31.4
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.2e-47 195.3 421 32.5
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-47 195.3 404 34.2
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 3.3e-45 187.2 420 31.9
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 5.6e-45 186.4 502 31.9
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 9.6e-45 185.7 486 28.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 4.8e-44 183.3 501 30.1
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.1e-43 182.2 271 41.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.6e-42 177.6 426 34.0
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.9e-40 171.4 256 41.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.4e-40 171.0 439 30.3
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 9.3e-40 169.1 271 38.7
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.7e-39 167.5 400 30.0
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.9e-38 163.7 435 29.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.5e-37 161.0 459 29.2
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 2.1e-36 157.9 401 29.9
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.2e-36 156.4 395 30.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 8.1e-36 156.0 403 30.0
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 8.1e-36 156.0 248 37.9
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 3.1e-35 154.1 399 30.1
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.6e-34 151.0 396 30.6
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.6e-34 151.0 408 29.2
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.5e-34 150.2 265 35.5
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 7.6e-34 149.4 400 28.5
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.3e-33 148.7 421 31.6
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.7e-33 148.3 393 30.8
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.4e-32 145.2 302 34.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 3.2e-32 144.1 263 38.8
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 4.6e-31 140.2 257 37.7
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.0e-31 139.8 256 35.5
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 9.6e-29 132.5 157 45.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 3.1e-27 127.5 157 45.2
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.0e-26 124.8 401 29.7
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 8.4e-25 119.4 176 37.5
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.2e-24 117.1 264 32.2
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.2e-23 115.5 270 33.3
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 6.0e-23 113.2 266 30.5
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.8e-22 111.7 127 48.8
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 4.8e-20 103.6 268 31.0
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-17 95.5 197 37.1
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.9e-17 94.4 223 31.4
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.1e-16 92.4 182 31.9
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.2e-16 90.5 144 41.0
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.5e-15 87.4 117 39.3
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 9.7e-13 79.3 422 23.2
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 9.7e-13 79.3 209 31.1
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.8e-12 77.0 157 33.1
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 7.7e-10 69.7 141 33.3
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 7.2e-08 63.2 185 30.3
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 5.1e-06 57.0 446 23.1


User provided reference genes

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