Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 7.6e-277 956.4 452 100.0
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 2.5e-227 792.0 445 82.9
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 2.4e-222 775.4 452 80.8
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 4.1e-222 774.6 450 80.9
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 7.0e-222 773.9 445 81.3
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.7e-221 771.9 445 81.3
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.2e-218 763.1 443 80.8
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 8.3e-215 750.4 452 78.8
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.4e-214 747.7 461 77.2
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 4.5e-213 744.6 454 78.4
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.9e-211 739.2 440 80.2
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 9.5e-211 736.9 454 77.5
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.6e-210 734.9 454 77.5
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.0e-209 733.4 438 79.0
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 3.0e-209 731.9 449 77.1
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 6.8e-209 730.7 435 79.5
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 8.9e-209 730.3 444 79.7
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 3.4e-208 728.4 451 76.7
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 8.3e-207 723.8 456 76.1
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.1e-206 723.4 442 77.1
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.4e-206 723.0 439 78.4
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.8e-206 722.6 454 76.9
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.8e-206 722.6 456 77.6
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.4e-206 722.2 441 78.5
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 4.1e-206 721.5 439 79.3
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 9.2e-206 720.3 436 78.0
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 9.2e-206 720.3 456 77.6
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.2e-205 719.9 451 76.1
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.7e-205 718.8 454 77.1
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.7e-205 718.8 444 77.5
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 2.7e-205 718.8 451 75.4
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 3.5e-205 718.4 451 75.6
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.5e-205 718.4 436 77.8
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 3.5e-205 718.4 459 75.6
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 4.5e-205 718.0 452 76.1
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 4.5e-205 718.0 440 77.0
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 5.9e-205 717.6 436 77.1
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 7.8e-205 717.2 433 78.1
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.0e-204 716.8 437 77.3
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.3e-204 716.5 438 78.3
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.7e-204 716.1 450 75.8
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.7e-204 716.1 440 76.6
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 2.3e-204 715.7 451 75.2
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 3.8e-204 714.9 431 78.4
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.6e-204 714.1 458 75.1
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 8.6e-204 713.8 435 76.6
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 8.6e-204 713.8 465 73.8
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.1e-203 713.4 452 76.3
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.9e-203 712.6 452 75.7
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-203 712.6 436 77.5
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.5e-203 712.2 436 76.6
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 2.5e-203 712.2 449 76.4
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 3.3e-203 711.8 452 75.9
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.3e-203 711.4 461 73.3
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 7.3e-203 710.7 449 75.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.6e-202 709.5 451 76.1
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.6e-202 709.5 438 76.7
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.1e-202 709.1 445 76.4
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.8e-202 708.8 437 76.9
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.8e-202 708.8 443 77.0
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.6e-202 708.4 440 75.7
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 3.6e-202 708.4 438 76.5
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.7e-202 708.0 454 76.7
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 4.7e-202 708.0 448 76.6
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 6.1e-202 707.6 463 73.2
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 6.1e-202 707.6 461 73.1
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 8.0e-202 707.2 444 76.1
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.0e-201 706.8 467 73.0
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.0e-201 706.8 432 77.5
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.4e-201 706.4 457 73.7
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.8e-201 706.1 452 74.1
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.8e-201 706.1 441 78.2
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 3.0e-201 705.3 435 75.6
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.0e-201 704.9 450 74.7
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 5.2e-201 704.5 452 73.9
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 6.8e-201 704.1 455 75.2
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 6.8e-201 704.1 437 76.7
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 6.8e-201 704.1 438 76.5
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 1.5e-200 703.0 440 75.7
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 3.4e-200 701.8 439 76.3
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 5.7e-200 701.0 448 77.0
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.2e-199 699.1 452 74.3
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 2.2e-199 699.1 441 75.3
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.9e-199 698.7 450 75.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 8.3e-199 697.2 434 76.3
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.1e-198 696.8 491 70.3
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.4e-198 696.4 441 74.1
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.8e-198 696.0 435 75.4
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.2e-198 695.3 450 73.1
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 3.2e-198 695.3 441 73.9
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 7.0e-198 694.1 436 76.4
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.2e-197 693.3 441 74.1
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-197 692.6 450 72.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.3e-196 689.1 364 84.9
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 3.9e-196 688.3 364 84.6
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 5.0e-196 688.0 386 81.9
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.5e-195 686.4 435 75.9
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.9e-195 686.0 440 75.0
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.2e-194 683.3 444 72.1
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 4.0e-193 678.3 436 73.6
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 8.9e-193 677.2 443 73.4
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.5e-192 676.4 442 73.1
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 5.8e-192 674.5 435 72.2
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 7.5e-192 674.1 431 75.4
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 3.7e-191 671.8 509 65.4
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 8.3e-191 670.6 430 75.8
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.4e-190 669.8 430 74.9
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.0e-188 663.7 437 73.7
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.1e-187 660.2 439 72.4
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.1e-185 653.7 385 77.9
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.5e-184 649.8 433 71.8
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.4e-182 643.3 438 69.6
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 6.6e-180 634.4 446 69.1
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.1e-179 633.6 440 69.5
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 5.6e-179 631.3 430 71.4
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 5.2e-177 624.8 453 66.9
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.3e-172 609.4 344 81.7
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.5e-171 606.7 322 86.0
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 2.8e-170 602.4 324 85.2
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 9.3e-166 587.4 428 67.8
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.3e-164 582.8 369 72.4
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.3e-162 577.0 431 65.7
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.8e-161 573.2 289 89.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 2.0e-160 569.7 291 91.1
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.6e-157 560.1 290 87.2
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.7e-151 540.0 342 75.4
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 3.3e-147 525.8 287 81.2
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.0e-144 516.5 334 68.3
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.6e-144 516.2 397 66.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.6e-141 506.9 266 87.2
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 3.2e-134 482.6 304 77.6
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 7.7e-128 461.5 300 73.0
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 3.0e-124 449.5 373 55.5
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.2e-122 441.4 314 66.9
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 2.2e-119 433.3 285 68.1
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.4e-110 401.4 336 53.0
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 5.9e-96 355.5 267 65.2
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.6e-95 351.7 318 52.2
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.3e-90 335.1 332 47.6
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.3e-70 269.6 138 88.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.4e-65 253.8 179 66.5
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 5.6e-54 216.1 109 88.1
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.8e-52 211.1 124 76.6
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.0e-52 209.9 119 79.8
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.4e-49 200.7 138 65.9
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 5.8e-43 179.5 127 66.1
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.4e-33 148.3 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.2e-33 146.7 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.4e-28 131.0 80 73.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.8e-26 123.6 101 61.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.8e-12 78.2 52 67.3
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 2.0e-11 74.7 115 43.5
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 3.2e-09 67.4 129 38.8


User provided reference genes

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