Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.2e-58 228.8 121 100.0
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 6.5e-58 227.3 121 99.2
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.7e-45 186.0 121 81.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.4e-44 183.0 120 80.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 5.4e-44 181.0 120 79.2
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 9.1e-44 180.3 120 78.3
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.2e-43 179.9 119 79.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.6e-43 179.5 119 78.2
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 2.7e-43 178.7 119 79.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 2.7e-43 178.7 119 79.0
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 3.5e-43 178.3 121 77.7
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.5e-43 177.9 119 78.2
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 7.7e-43 177.2 111 81.1
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 7.7e-43 177.2 121 76.9
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 7.7e-43 177.2 119 78.2
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.3e-42 176.4 121 77.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.3e-42 176.4 122 75.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.2e-42 175.6 121 78.5
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.2e-42 175.6 121 78.5
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.2e-42 175.6 121 74.4
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 6.5e-42 174.1 119 76.5
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 8.5e-42 173.7 115 77.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-41 172.9 119 74.8
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.5e-41 172.9 121 73.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 3.2e-41 171.8 111 80.2
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 3.2e-41 171.8 119 76.5
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.2e-41 171.4 119 74.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 5.5e-41 171.0 111 80.2
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 5.5e-41 171.0 106 83.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 7.2e-41 170.6 112 78.6
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 7.2e-41 170.6 111 80.2
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.2e-41 170.6 121 75.2
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 9.5e-41 170.2 121 76.0
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 9.5e-41 170.2 121 75.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 9.5e-41 170.2 121 75.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 9.5e-41 170.2 119 76.5
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.2e-40 169.9 121 76.0
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.6e-40 169.5 110 80.0
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.6e-40 169.5 110 80.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.6e-40 169.5 121 76.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.6e-40 169.5 122 75.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.1e-40 169.1 111 80.2
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 2.8e-40 168.7 111 79.3
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.8e-40 168.7 121 73.6
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.6e-40 168.3 115 76.5
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 3.6e-40 168.3 120 75.8
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 4.7e-40 167.9 123 74.0
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 4.7e-40 167.9 110 79.1
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 4.7e-40 167.9 118 74.6
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 6.1e-40 167.5 111 77.5
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 8.0e-40 167.2 122 73.8
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.0e-39 166.8 123 73.2
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-39 166.4 109 78.9
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 1.4e-39 166.4 121 73.6
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.8e-39 166.0 115 75.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-39 166.0 106 80.2
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.8e-39 166.0 121 72.7
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.8e-39 166.0 121 73.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.0e-39 165.2 117 72.6
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 3.0e-39 165.2 122 73.0
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 3.0e-39 165.2 122 73.0
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 4.0e-39 164.9 123 72.4
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 5.2e-39 164.5 105 81.0
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 6.8e-39 164.1 121 73.6
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 6.8e-39 164.1 118 75.4
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 3.4e-38 161.8 114 73.7
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 5.7e-38 161.0 113 70.8
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 7.5e-38 160.6 121 71.9
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 9.8e-38 160.2 101 81.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.7e-37 159.5 123 69.9
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.2e-37 159.1 126 69.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 2.8e-37 158.7 121 67.8
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.9e-37 157.9 111 73.9
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 6.3e-37 157.5 112 72.3
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.3e-37 157.1 101 78.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 8.3e-37 157.1 104 76.9
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.8e-36 156.0 121 70.2
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.8e-36 156.0 110 73.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.8e-36 156.0 110 73.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.4e-36 155.6 100 78.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.4e-36 155.6 100 78.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.4e-36 155.6 100 78.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.4e-36 155.6 100 78.0
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.1e-36 155.2 110 73.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.1e-36 154.8 107 74.8
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 4.1e-36 154.8 105 75.2
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 5.4e-36 154.5 114 71.1
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.4e-36 154.5 110 72.7
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.4e-36 154.5 110 72.7
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.4e-36 154.5 122 70.5
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 9.2e-36 153.7 98 75.5
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 9.2e-36 153.7 100 77.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.2e-35 153.3 97 76.3
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-35 153.3 113 72.6
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-35 153.3 113 72.6
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.0e-35 152.5 101 72.3
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 2.0e-35 152.5 118 68.6
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 3.5e-35 151.8 118 68.6
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 7.8e-35 150.6 115 67.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.0e-34 150.2 100 73.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.0e-34 150.2 120 65.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.0e-34 150.2 113 64.6
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.7e-34 149.4 103 73.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.7e-34 149.4 106 72.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.9e-34 148.7 110 71.8
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 3.8e-34 148.3 121 66.1
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 8.6e-34 147.1 118 66.1
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.1e-33 146.7 95 74.7
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.1e-33 146.7 125 64.0
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.5e-33 145.6 111 70.3
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 2.5e-33 145.6 112 70.5
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 5.6e-33 144.4 119 66.4
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.2e-32 143.3 119 65.5
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 2.8e-32 142.1 109 64.2
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.2e-30 136.7 96 72.9
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.0e-30 136.0 111 65.8
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 3.4e-30 135.2 105 70.5
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 4.4e-30 134.8 109 63.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.7e-30 134.4 85 76.5
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 9.8e-30 133.7 92 72.8
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.1e-28 130.2 106 67.0
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 3.0e-26 122.1 103 64.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.9e-26 121.7 85 74.1
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 3.3e-25 118.6 105 59.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 9.5e-25 117.1 83 73.5
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.2e-24 116.7 103 60.2
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.8e-23 112.8 74 77.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.8e-23 112.8 74 77.0
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.4e-20 103.2 98 54.1
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.9e-20 102.8 69 73.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 4.1e-20 101.7 64 76.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 5.4e-20 101.3 68 73.5
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.5e-19 98.6 69 71.0
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 6.6e-18 94.4 70 67.1
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.9e-17 92.8 64 65.6
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.3e-17 91.7 74 63.5
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 8.1e-16 87.4 106 54.7
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-15 86.7 73 61.6
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 8.9e-15 84.0 85 54.1
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 3.4e-14 82.0 56 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 4.4e-14 81.6 92 51.1
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.7e-13 79.7 57 70.2
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-13 79.0 85 54.1
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.2e-12 75.5 103 45.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.6e-11 73.2 115 40.9
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 7.8e-11 70.9 60 63.3
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 5.1e-10 68.2 82 47.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 5.1e-10 68.2 53 62.3
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 5.6e-09 64.7 50 68.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 7.3e-09 64.3 121 33.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 2.8e-08 62.4 77 48.1
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 2.8e-08 62.4 56 58.9
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 3.1e-07 58.9 52 59.6
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-07 58.2 75 44.0
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 5.2e-07 58.2 42 69.0


User provided reference genes

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