Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 5.6e-226 787.3 415 100.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.7e-159 565.8 374 77.0
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 7.7e-159 564.3 409 71.9
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.8e-158 562.0 415 71.1
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 4.2e-157 558.5 445 67.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 7.2e-157 557.8 368 75.8
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.2e-156 557.0 387 74.9
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.1e-156 556.2 414 71.7
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.6e-156 555.4 419 70.9
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.4e-155 553.5 417 70.5
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.8e-155 553.1 400 72.5
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.2e-154 550.4 417 71.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 2.6e-154 549.3 445 66.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.6e-154 549.3 370 75.1
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 5.7e-154 548.1 387 76.5
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 9.8e-154 547.4 416 69.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 9.8e-154 547.4 405 70.4
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.8e-153 545.8 370 74.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 3.7e-153 545.4 406 70.7
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 4.8e-153 545.0 360 75.3
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.1e-152 543.9 392 74.0
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 4.1e-152 542.0 415 68.0
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 5.4e-152 541.6 413 69.0
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.2e-151 540.4 416 68.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.6e-151 540.0 409 70.2
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.0e-151 539.7 400 70.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.5e-151 538.9 415 68.4
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 7.7e-151 537.7 402 69.4
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.2e-149 531.9 415 69.2
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 7.2e-149 531.2 421 68.6
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.6e-148 530.0 400 69.8
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.6e-148 530.0 415 68.4
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.0e-147 525.8 372 70.7
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.5e-146 523.5 354 73.4
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 7.5e-146 521.2 391 69.3
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 9.8e-146 520.8 370 72.4
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.7e-145 518.8 402 70.6
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.9e-145 518.5 415 65.8
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.3e-145 518.1 420 66.2
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 3.1e-144 515.8 378 71.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.1e-144 515.8 358 72.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 7.0e-144 514.6 402 69.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.6e-143 513.5 431 65.4
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.7e-143 512.7 365 71.0
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.7e-143 512.7 358 72.6
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 5.9e-143 511.5 450 63.3
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 7.7e-143 511.1 288 84.7
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.7e-142 510.0 411 64.7
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.3e-142 509.6 397 66.8
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 5.0e-142 508.4 357 71.1
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 8.6e-142 507.7 372 69.4
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.5e-141 506.9 378 71.4
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.5e-141 506.1 357 71.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 7.3e-141 504.6 423 64.5
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 9.5e-141 504.2 416 64.7
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 9.5e-141 504.2 369 70.5
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 9.5e-141 504.2 369 70.2
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.1e-140 503.1 358 70.9
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.6e-140 502.3 369 70.2
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.6e-140 502.3 369 70.2
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.7e-140 501.9 288 84.7
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 6.1e-140 501.5 399 66.7
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.0e-139 499.2 399 66.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 8.9e-139 497.7 362 69.3
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.2e-138 497.3 371 70.1
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.0e-138 496.5 415 64.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 4.9e-137 491.9 385 66.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 7.0e-136 488.0 382 70.7
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.2e-135 487.3 361 67.9
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.6e-135 486.9 425 60.5
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.6e-135 486.9 399 63.9
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.3e-134 483.8 345 70.4
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 3.0e-134 482.6 421 62.0
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.0e-134 481.9 288 80.6
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 6.6e-134 481.5 398 64.1
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 8.6e-134 481.1 418 59.3
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 8.0e-132 474.6 292 78.1
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.1e-131 472.6 372 65.1
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.3e-129 467.2 369 64.8
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.2e-129 466.5 407 62.4
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.2e-129 466.5 367 65.1
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.9e-129 466.1 406 61.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.9e-129 465.3 369 63.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.1e-128 464.2 399 63.2
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.0e-127 459.9 371 63.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 6.0e-127 458.4 363 64.7
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 8.6e-126 454.5 383 64.8
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 2.5e-125 453.0 402 59.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.3e-125 452.2 369 64.2
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 4.3e-125 452.2 384 61.2
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 5.6e-125 451.8 383 60.8
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.1e-124 449.9 371 61.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 6.2e-124 448.4 288 77.8
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 8.1e-124 448.0 379 62.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.6e-122 443.0 408 58.3
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 3.4e-122 442.6 389 61.7
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.8e-122 441.8 392 61.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.3e-121 440.7 395 60.0
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.9e-121 439.5 399 59.6
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-120 437.6 390 60.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-120 437.6 390 60.8
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.4e-120 436.4 388 60.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 5.4e-120 435.3 407 58.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 7.1e-120 434.9 375 62.4
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.1e-119 433.3 377 62.6
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.1e-119 433.3 390 60.5
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 6.0e-119 431.8 364 64.3
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.0e-118 431.0 377 62.9
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.0e-118 431.0 394 58.9
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.6e-117 425.2 376 61.4
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 7.3e-117 424.9 404 58.9
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 7.3e-117 424.9 378 60.8
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.1e-116 423.3 489 49.5
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-115 420.2 389 59.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.8e-115 420.2 352 63.1
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 3.4e-114 416.0 385 59.7
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.4e-114 416.0 371 62.8
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 5.8e-114 415.2 400 55.5
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 7.6e-114 414.8 385 59.7
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 9.9e-114 414.5 379 58.3
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.2e-113 413.3 376 55.1
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.8e-113 412.5 375 60.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 3.8e-113 412.5 381 59.8
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 3.8e-113 412.5 381 59.8
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 6.4e-113 411.8 291 64.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 8.4e-113 411.4 385 59.2
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 3.2e-112 409.5 382 59.4
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 3.2e-112 409.5 382 59.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.1e-112 409.1 379 60.4
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.1e-112 409.1 330 64.2
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 7.1e-112 408.3 381 59.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.1e-111 406.8 334 67.1
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.6e-111 405.6 369 60.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.9e-109 400.2 288 72.2
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 3.3e-109 399.4 360 61.7
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 3.6e-100 369.4 370 52.4
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 4.2e-96 355.9 425 46.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.1e-92 343.6 252 69.8
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 4.2e-80 302.8 160 90.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 5.7e-61 239.2 286 44.1
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 6.5e-57 225.7 167 68.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.4e-56 224.6 287 42.9
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-54 217.6 161 68.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 7.0e-51 205.7 274 46.0
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.7e-41 174.5 249 46.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 9.5e-32 142.1 187 48.7
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 3.6e-31 140.2 124 61.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 4.3e-24 116.7 73 78.1
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.8e-22 111.3 140 47.1
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.1e-19 102.1 280 28.9
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 3.2e-19 100.5 124 48.4
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 3.1e-14 84.0 56 67.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 5.8e-13 79.7 109 45.9


User provided reference genes

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