Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 6.4e-233 810.4 410 100.0
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 4.5e-130 468.8 416 61.3
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 1.2e-125 454.1 406 61.6
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.8e-125 451.1 422 59.7
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.9e-124 448.7 422 58.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.6e-122 443.7 410 59.8
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.6e-122 443.7 416 59.4
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 8.6e-121 438.0 420 58.8
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.4e-118 430.6 410 57.3
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.4e-117 426.0 394 59.6
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 5.8e-117 425.2 388 61.9
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.3e-113 413.3 467 52.9
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 8.1e-111 404.8 393 57.3
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.8e-110 403.7 375 60.5
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.5e-109 400.6 414 55.3
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 6.4e-108 395.2 388 58.5
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.6e-106 390.6 453 51.4
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 2.7e-106 389.8 390 55.6
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 3.5e-106 389.4 398 56.5
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.6e-106 389.0 418 54.5
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 4.6e-106 389.0 402 57.2
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 7.8e-106 388.3 413 55.4
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 3.0e-105 386.3 419 53.9
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 6.6e-105 385.2 395 52.9
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.1e-104 384.4 404 55.2
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.5e-104 384.0 391 57.0
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 2.5e-104 383.3 444 52.3
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 8.1e-103 378.3 461 50.8
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 8.1e-103 378.3 540 43.9
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 8.1e-103 378.3 405 52.3
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.1e-102 377.9 395 54.4
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 6.8e-102 375.2 417 52.0
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 2.6e-101 373.2 394 53.3
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 5.8e-101 372.1 371 57.7
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 5.8e-101 372.1 383 56.4
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 7.6e-101 371.7 394 53.0
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.3e-100 370.9 433 52.2
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 2.9e-100 369.8 394 52.8
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.1e-99 367.9 408 51.5
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 1.9e-99 367.1 399 52.9
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 3.2e-99 366.3 403 53.8
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 4.2e-99 365.9 390 53.6
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.2e-98 364.4 393 53.2
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 2.7e-98 363.2 427 51.8
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.5e-98 362.8 416 52.2
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 4.6e-98 362.5 373 53.6
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.7e-97 360.5 406 51.0
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 1.9e-96 357.1 452 47.6
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 2.5e-96 356.7 413 48.7
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 2.5e-96 356.7 407 52.6
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 4.3e-96 355.9 402 50.5
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 8.1e-95 351.7 418 48.8
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.1e-94 351.3 491 46.2
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 1.8e-94 350.5 401 51.4
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 6.9e-94 348.6 406 51.0
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 7.6e-93 345.1 396 50.5
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 2.2e-92 343.6 444 48.0
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 2.9e-92 343.2 480 45.8
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.1e-91 341.3 389 51.9
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 1.7e-89 334.0 439 48.1
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 3.9e-89 332.8 415 49.9
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 6.6e-89 332.0 395 50.1
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 8.7e-89 331.6 419 48.0
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.8e-86 323.9 421 46.8
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 3.1e-86 323.2 414 47.6
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.5e-85 320.9 426 46.9
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 4.5e-85 319.3 415 47.7
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 9.9e-85 318.2 391 47.8
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 9.9e-85 318.2 418 47.6
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 3.8e-84 316.2 401 46.6
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 6.4e-84 315.5 468 43.6
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.9e-83 313.9 392 45.7
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 2.4e-83 313.5 412 45.9
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 5.4e-83 312.4 397 48.1
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 9.3e-83 311.6 416 46.4
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 9.3e-83 311.6 416 46.4
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 9.3e-83 311.6 409 46.9
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 7.9e-82 308.5 417 45.3
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 7.9e-82 308.5 417 45.3
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 3.9e-81 306.2 406 47.0
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 3.9e-81 306.2 416 45.9
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.3e-79 301.2 416 44.2
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.3e-79 301.2 400 48.2
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 7.6e-77 292.0 417 44.8
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.2e-76 290.4 331 50.2
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 6.4e-76 288.9 405 45.2
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 4.2e-75 286.2 338 48.8
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 1.1e-72 278.1 404 43.3
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.9e-72 277.3 212 66.5
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.9e-72 277.3 414 43.7
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 1.4e-70 271.2 347 48.1
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 1.7e-68 264.2 410 41.5
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.2e-68 263.8 377 46.7
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 4.6e-66 256.1 188 68.6
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 8.2e-55 218.8 198 56.6
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 1.0e-52 211.8 256 48.0
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 4.8e-47 193.0 496 32.5
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 1.6e-37 161.4 195 44.6
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 8.0e-34 149.1 171 53.2
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 6.8e-33 146.0 239 42.7
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 1.5e-32 144.8 123 61.8
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 9.8e-32 142.1 460 32.6
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 9.8e-32 142.1 460 32.6
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.3e-31 141.7 536 27.8
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.5e-27 127.5 131 53.4
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 6.1e-26 122.9 149 49.7
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.5e-24 118.2 115 53.0
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 2.8e-23 114.0 162 43.2
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 4.5e-21 106.7 74 63.5
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 5.0e-20 103.2 116 53.4
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.2e-18 98.6 234 32.5
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.6e-18 98.2 393 27.7
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 3.0e-17 94.0 77 57.1
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 7.5e-16 89.4 75 57.3
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-14 85.5 64 65.6
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 4.1e-14 83.6 102 48.0
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 5.9e-13 79.7 66 59.1
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 1.3e-12 78.6 176 33.5
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 6.8e-09 66.2 114 38.6
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.9e-09 65.9 230 31.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.5e-08 65.1 46 67.4
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.4e-08 63.5 179 30.7
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 9.8e-08 62.4 86 50.0
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.9e-07 60.8 180 32.8
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 3.7e-07 60.5 117 30.8
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.9e-06 58.2 153 28.1
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 9.2e-06 55.8 117 32.5


User provided reference genes

Program Settings