Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 8.8e-38 159.8 83 100.0
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 1.2e-23 112.8 70 78.6
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 4.7e-23 110.9 70 77.1
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 1.5e-21 105.9 70 75.7
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 2.6e-21 105.1 70 77.1
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 9.7e-21 103.2 70 78.6
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.3e-20 102.8 75 70.7
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.3e-20 102.8 75 70.7
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.7e-20 102.4 71 74.6
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.7e-20 102.4 71 73.2
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.7e-20 102.4 71 73.2
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.8e-20 101.7 71 73.2
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.8e-20 101.7 71 73.2
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 8.2e-20 100.1 71 73.2
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.1e-19 99.8 75 69.3
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 1.1e-19 99.8 74 71.6
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 1.4e-19 99.4 70 71.4
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 3.1e-19 98.2 80 65.0
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 1.2e-18 96.3 73 65.8
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 5.9e-18 94.0 71 70.4
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 7.7e-18 93.6 73 65.8
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 1.7e-17 92.4 74 64.9
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 2.9e-17 91.7 74 70.3
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 5.0e-17 90.9 68 73.5
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 5.0e-17 90.9 68 73.5
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 5.0e-17 90.9 68 73.5
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 1.1e-16 89.7 68 72.1
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.1e-16 89.7 68 72.1
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.1e-16 89.7 68 72.1
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 1.1e-16 89.7 71 69.0
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 1.5e-16 89.4 74 63.5
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 1.9e-16 89.0 76 63.2
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 7.2e-16 87.0 59 74.6
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 6.1e-15 84.0 73 64.4
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 8.0e-15 83.6 77 59.7
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 1.0e-14 83.2 75 64.0
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 2.3e-14 82.0 70 65.7
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 3.0e-14 81.6 74 59.5
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 3.0e-14 81.6 76 64.5
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 4.0e-14 81.3 73 65.8
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 4.0e-14 81.3 59 72.9
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 6.8e-14 80.5 79 59.5
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 8.8e-14 80.1 74 63.5
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 2.6e-13 78.6 76 60.5
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 2.6e-13 78.6 77 57.1
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 3.4e-13 78.2 72 63.9
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 4.4e-13 77.8 72 62.5
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 7.5e-13 77.0 72 61.1
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 1.3e-12 76.3 72 59.7
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 2.2e-12 75.5 74 58.1
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 2.8e-12 75.1 74 58.1
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 2.8e-12 75.1 74 60.8
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 3.7e-12 74.7 76 59.2
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 1.1e-11 73.2 76 59.2
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 3.1e-11 71.6 74 58.1
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 3.1e-11 71.6 71 52.1
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 3.1e-11 71.6 71 50.7
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 3.1e-11 71.6 81 54.3
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 3.1e-11 71.6 75 56.0
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 9.1e-11 70.1 72 61.1
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 1.6e-10 69.3 74 56.8
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 5.9e-10 67.4 77 54.5
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 5.9e-10 67.4 77 54.5
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 1.7e-09 65.9 74 58.1
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 2.2e-09 65.5 74 58.1
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 2.2e-09 65.5 74 58.1
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 5.0e-09 64.3 88 52.3
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 1.1e-08 63.2 83 48.2
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 1.9e-08 62.4 77 50.6
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 1.9e-08 62.4 63 60.3
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 4.2e-08 61.2 69 55.1
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 2.7e-07 58.5 77 49.4
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 2.7e-07 58.5 78 47.4
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 8.0e-07 57.0 70 47.1
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 1.4e-06 56.2 75 52.0
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 1.8e-06 55.8 78 50.0
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 2.3e-06 55.5 69 49.3
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 3.0e-06 55.1 77 48.1
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 3.0e-06 55.1 70 54.3


User provided reference genes

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