Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 6.4e-181 637.5 370 100.0
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 1.1e-137 493.8 371 72.5
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 2.4e-135 486.1 369 71.8
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 6.9e-135 484.6 358 80.4
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.0e-134 483.0 368 79.6
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 3.4e-134 482.3 369 78.6
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.5e-134 481.9 348 83.0
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.3e-133 480.3 348 82.8
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 2.9e-133 479.2 348 74.4
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 3.8e-133 478.8 353 73.7
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.1e-132 477.2 361 77.8
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 3.2e-132 475.7 352 79.8
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 9.4e-132 474.2 369 77.5
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 3.6e-131 472.2 363 76.6
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.8e-130 469.9 365 75.3
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.8e-130 469.9 352 73.0
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 6.7e-130 468.0 371 73.9
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 2.2e-128 463.0 370 67.3
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.8e-128 462.6 370 76.2
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 3.7e-128 462.2 370 75.7
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 4.8e-128 461.8 362 69.6
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 6.3e-128 461.5 370 68.1
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.8e-127 459.9 365 75.9
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.8e-127 459.9 367 68.1
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 6.9e-127 458.0 369 75.6
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 4.5e-126 455.3 364 69.2
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 5.9e-126 454.9 370 75.1
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.7e-126 454.5 371 69.0
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 7.7e-126 454.5 364 69.5
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 1.0e-125 454.1 365 71.8
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.0e-125 454.1 358 74.0
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 6.5e-125 451.4 330 81.8
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.1e-124 450.7 354 77.1
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.1e-124 450.7 370 70.0
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.4e-124 450.3 371 68.5
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.4e-124 450.3 370 67.3
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.9e-124 449.9 372 68.8
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 5.5e-124 448.4 357 74.2
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 7.2e-124 448.0 364 67.6
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 1.6e-123 446.8 349 77.1
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 6.1e-123 444.9 357 68.1
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 3.0e-122 442.6 363 76.3
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 3.9e-122 442.2 367 72.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 6.7e-122 441.4 365 70.7
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.8e-122 441.0 354 68.9
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 9.7e-121 437.6 354 72.0
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.3e-120 437.2 354 73.7
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 3.7e-120 435.6 354 65.8
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 3.7e-120 435.6 354 66.1
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 6.3e-120 434.9 354 65.8
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.4e-119 433.7 353 68.6
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 1.8e-119 433.3 365 65.5
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.4e-119 433.0 290 78.6
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.1e-119 432.6 358 73.2
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 4.1e-119 432.2 352 67.0
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 7.0e-119 431.4 354 65.0
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 9.1e-119 431.0 364 69.2
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 9.1e-119 431.0 343 67.1
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 5.9e-118 428.3 352 67.0
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.3e-117 427.2 294 76.5
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 6.5e-117 424.9 377 71.6
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-116 423.7 352 65.6
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 3.2e-116 422.5 395 62.0
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 7.2e-116 421.4 366 64.2
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 9.4e-116 421.0 352 65.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 9.4e-116 421.0 352 65.6
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 1.0e-114 417.5 343 67.3
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.3e-114 416.4 368 63.3
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 4.8e-112 408.7 357 63.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.8e-111 406.8 370 63.5
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.4e-111 406.4 292 79.8
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.3e-111 405.2 345 63.2
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 7.0e-111 404.8 307 71.3
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 9.1e-111 404.4 340 64.4
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.6e-110 402.9 361 72.3
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.9e-109 399.4 360 60.0
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.9e-109 399.4 342 65.2
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 6.5e-109 398.3 350 62.9
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 6.5e-109 398.3 349 65.9
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.1e-108 397.5 370 60.5
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.1e-108 397.5 358 61.7
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.1e-108 397.5 358 61.7
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.1e-108 397.5 355 62.5
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.9e-108 396.7 355 62.3
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.9e-108 396.7 342 64.3
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 2.5e-108 396.4 314 72.0
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 5.5e-108 395.2 353 62.0
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 2.1e-107 393.3 352 70.5
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.6e-107 392.5 355 62.0
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.0e-106 391.0 320 73.8
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 8.8e-106 387.9 295 67.8
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.2e-105 387.5 333 71.2
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 2.0e-105 386.7 345 69.6
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.7e-105 385.2 335 63.0
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 5.4e-103 378.6 359 60.2
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.0e-103 378.3 354 61.0
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.5e-102 375.9 295 77.3
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 2.2e-101 373.2 277 78.7
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 4.0e-98 362.5 345 58.3
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 5.2e-98 362.1 414 55.3
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.3e-96 357.5 394 61.7
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.8e-95 353.6 260 73.1
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.4e-95 352.1 297 65.0
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.7e-93 347.1 296 64.5
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.1e-92 344.4 241 75.5
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.6e-86 323.9 349 57.9
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 2.0e-86 323.6 245 82.4
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.1e-84 317.8 451 45.0
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.7e-83 312.4 408 48.8
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.2e-81 307.8 362 50.8
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 2.4e-79 300.1 197 78.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.0e-77 293.1 233 70.8
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 6.6e-77 292.0 239 69.9
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 4.3e-76 289.3 258 65.1
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.6e-75 286.2 423 46.6
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 3.4e-73 279.6 223 66.8
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 4.9e-72 275.8 235 63.8
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 7.1e-71 271.9 242 60.7
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 2.7e-70 270.0 216 66.7
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 5.1e-61 239.2 199 73.9
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.5e-60 236.9 316 48.4
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.6e-57 226.9 346 40.5
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 3.2e-55 219.9 336 39.0
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 9.6e-52 208.4 348 38.2
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 9.0e-50 201.8 157 68.8
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.0e-49 200.7 160 65.6
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.2e-40 170.6 139 66.9
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 6.4e-40 169.1 148 65.5
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 7.1e-39 165.6 166 67.5
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 9.6e-36 155.2 196 48.0
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.0e-29 133.7 125 77.6
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 9.6e-28 128.6 185 45.9
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 7.6e-25 119.0 234 33.3
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 3.3e-20 103.6 108 57.4
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 3.7e-19 100.1 235 32.3
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 4.8e-19 99.8 114 73.7
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.2e-19 99.0 100 57.0
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.2e-16 90.9 104 47.1
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 6.5e-16 89.4 50 88.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 3.6e-14 83.6 53 81.1
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 4.6e-14 83.2 90 54.4
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 3.8e-08 63.5 44 72.7
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 2.1e-06 57.8 87 41.4
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 3.6e-06 57.0 77 40.3
FAN23G2278 Fragaria x ananassa HOM05D002335 ORTHO05D200751 7.9e-06 55.8 32 90.6


User provided reference genes

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