Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 0.0e+00 1338.6 677 100.0
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 6.2e-307 1057.0 652 79.0
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 3.2e-303 1044.6 654 79.8
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 3.2e-303 1044.6 654 80.6
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 4.6e-302 1040.8 656 77.4
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 1.0e-301 1039.6 654 78.9
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 1.3e-301 1039.3 647 78.7
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 2.3e-301 1038.5 657 77.0
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 5.1e-301 1037.3 656 77.3
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 6.6e-301 1036.9 651 78.5
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.2e-299 1032.7 647 78.7
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.0e-298 1027.7 647 78.7
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.0e-293 1013.1 661 74.9
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.7e-293 1012.3 650 76.0
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 6.6e-293 1010.4 650 76.6
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 6.9e-290 1000.3 647 76.4
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.5e-289 999.2 652 76.5
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.6e-289 998.4 648 74.7
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 3.4e-289 998.0 648 74.8
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.5e-289 997.7 651 75.3
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.9e-287 992.3 652 75.2
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 1.9e-287 992.3 651 75.0
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 3.2e-287 991.5 657 76.0
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 4.2e-287 991.1 650 76.0
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 2.1e-286 988.8 649 75.5
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 7.9e-286 986.9 647 75.4
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 6.7e-285 983.8 653 75.0
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.9e-284 982.2 647 75.1
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 3.3e-284 981.5 655 74.4
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 8.1e-283 976.9 653 74.4
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.8e-282 975.7 652 73.6
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 2.4e-282 975.3 646 73.8
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 2.2e-280 968.8 653 72.7
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 3.8e-280 968.0 652 73.6
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.4e-279 966.1 647 73.3
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.2e-278 963.0 619 76.4
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 3.5e-278 961.4 656 73.3
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 4.6e-278 961.1 650 74.3
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 6.0e-278 960.7 657 73.4
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 7.9e-278 960.3 660 72.6
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.6e-273 945.3 646 71.8
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 4.5e-273 944.5 646 71.5
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 7.1e-271 937.2 646 70.1
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 6.7e-269 930.6 655 70.5
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 1.1e-268 929.9 645 71.9
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 7.4e-268 927.2 658 70.7
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 2.8e-267 925.2 647 71.1
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 5.9e-265 917.5 650 70.2
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.2e-264 915.6 581 76.2
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.4e-263 912.9 650 70.8
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 4.2e-263 911.4 650 70.6
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.2e-262 909.8 651 69.4
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 1.6e-262 909.4 654 69.7
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 1.9e-260 902.5 646 70.0
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.5e-260 902.1 647 68.8
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.6e-259 899.4 640 69.7
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.1e-258 896.7 618 72.3
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 1.5e-257 892.9 644 69.6
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.1e-255 886.7 647 68.9
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 7.9e-254 880.6 642 67.4
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 7.9e-254 880.6 642 67.4
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 2.3e-253 879.0 651 66.7
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 3.0e-253 878.6 661 69.0
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 3.9e-253 878.2 645 67.6
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 2.8e-251 872.1 653 66.3
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 2.8e-251 872.1 642 66.8
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.4e-250 869.8 650 66.3
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 3.1e-250 868.6 651 66.4
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 4.5e-249 864.8 658 65.8
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 4.5e-249 864.8 655 67.0
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 1.7e-248 862.8 648 66.0
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 6.5e-248 860.9 642 66.2
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 8.5e-248 860.5 642 66.0
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 8.5e-248 860.5 648 65.7
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 3.2e-247 858.6 642 66.5
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 7.2e-247 857.4 670 64.8
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 4.7e-246 854.7 655 65.3
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.2e-239 832.0 646 64.9
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 4.0e-237 825.1 649 65.3
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 1.5e-236 823.2 641 63.5
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 2.6e-236 822.4 641 64.0
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 1.8e-234 816.2 648 65.1
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.2e-233 813.5 654 61.9
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.7e-232 809.7 684 62.1
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 2.7e-230 802.4 654 61.2
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.0e-229 800.4 642 62.5
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.3e-229 799.3 525 74.1
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 7.2e-223 777.7 659 62.4
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 5.0e-216 755.0 558 66.3
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 4.3e-215 751.9 646 61.8
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 5.0e-208 728.4 654 60.1
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 8.6e-200 701.0 629 58.7
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 2.8e-198 696.0 554 64.3
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 8.1e-198 694.5 686 55.0
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.1e-194 684.1 653 58.5
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 3.6e-190 669.1 628 56.7
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 4.5e-172 609.0 497 62.8
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 3.8e-171 605.9 575 56.3
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.1e-170 604.4 639 50.7
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 1.8e-168 597.0 442 67.4
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.9e-167 593.6 649 52.4
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 2.5e-167 593.2 659 48.4
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 1.6e-158 563.9 665 44.8
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.3e-155 554.3 657 44.9
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 1.8e-128 464.2 630 40.2
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 3.2e-93 347.1 223 74.9
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.2e-92 345.1 339 55.2
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 3.5e-52 210.7 143 72.0
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 3.0e-51 207.6 351 37.9
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 3.9e-51 207.2 292 44.5
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 4.0e-48 197.2 138 71.0
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.6e-47 194.5 156 60.9
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 5.8e-47 193.4 160 59.4
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 7.9e-44 183.0 107 80.4
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 6.7e-43 179.9 107 79.4
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 3.3e-42 177.6 131 66.4
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.3e-42 177.2 198 50.5
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.3e-40 170.2 155 56.1
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 2.0e-39 168.3 110 76.4
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.2e-38 164.9 155 53.5
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.1e-34 152.5 85 83.5
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 1.1e-34 152.5 93 78.5
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 7.4e-34 149.8 230 35.2
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.9e-32 143.3 90 72.2
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 5.5e-29 133.7 101 65.3
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.0e-27 129.4 82 73.2
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 5.1e-27 127.1 81 74.1
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 2.5e-26 124.8 80 73.8
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.2e-20 105.9 88 59.1
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-18 99.0 56 76.8
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 4.1e-16 90.9 48 89.6
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 7.0e-16 90.1 516 23.4
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 2.6e-15 88.2 89 50.6
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.1e-13 82.8 54 74.1
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 4.7e-12 77.4 200 28.5


User provided reference genes

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