Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.7e-298 1028.5 503 100.0
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.8e-210 736.1 503 70.0
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 4.1e-207 724.9 481 70.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-206 723.0 501 68.3
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 6.0e-206 721.1 500 69.4
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-205 719.9 497 68.8
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.7e-205 719.5 485 69.5
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-205 719.5 499 69.3
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.3e-205 719.2 502 68.7
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 5.1e-205 718.0 505 67.9
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.9e-204 716.1 469 72.7
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.5e-204 713.8 489 69.3
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.5e-204 713.8 489 69.3
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.2e-203 713.4 489 69.7
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.8e-203 712.2 465 71.4
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.6e-203 711.8 489 69.3
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.4e-202 709.9 481 67.4
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.8e-202 709.5 491 68.8
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 6.8e-202 707.6 481 67.4
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 8.9e-202 707.2 481 67.4
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.5e-201 706.4 505 66.5
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.5e-201 706.4 477 70.2
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.0e-201 706.1 482 69.1
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 2.6e-201 705.7 500 70.0
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 3.4e-201 705.3 466 70.8
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 4.4e-201 704.9 470 70.4
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 7.6e-201 704.1 463 71.1
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.6e-201 704.1 480 69.2
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 7.6e-201 704.1 467 70.2
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.3e-200 703.4 486 68.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 2.2e-200 702.6 451 72.3
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.8e-200 701.8 483 67.5
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 3.8e-200 701.8 487 68.8
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 4.9e-200 701.4 479 69.3
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.1e-199 700.3 495 67.5
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.4e-199 699.9 474 70.0
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.4e-199 699.1 511 65.4
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 9.2e-199 697.2 492 68.1
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 9.2e-199 697.2 480 69.8
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.2e-198 696.8 461 70.5
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.1e-198 696.0 490 66.9
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.7e-198 695.7 482 68.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 7.8e-198 694.1 505 66.3
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 7.8e-198 694.1 465 72.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.0e-197 693.7 484 68.6
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.0e-197 692.2 511 64.4
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.9e-196 689.5 497 67.0
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 4.3e-196 688.3 493 66.7
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 5.6e-196 688.0 467 70.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 7.3e-196 687.6 466 70.2
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.2e-195 686.8 465 69.0
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.8e-195 685.6 456 69.5
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.2e-195 684.5 505 65.3
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.4e-194 682.6 491 67.0
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.0e-194 681.8 470 67.2
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 5.2e-194 681.4 463 69.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 4.4e-193 678.3 488 66.6
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 9.9e-193 677.2 468 67.9
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.2e-192 676.0 477 67.1
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 2.2e-192 676.0 424 74.8
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.9e-192 675.6 471 68.6
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 8.4e-192 674.1 473 66.6
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-191 673.7 489 65.4
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.1e-191 673.7 455 68.4
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.4e-191 672.5 512 63.1
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 5.4e-191 671.4 493 64.3
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.1e-191 671.0 514 62.8
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 7.1e-191 671.0 457 68.3
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.1e-190 669.5 518 62.4
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 3.5e-190 668.7 494 64.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.5e-190 668.7 463 68.3
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.5e-190 668.7 469 67.4
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 7.8e-190 667.5 493 63.5
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.3e-189 666.8 466 66.7
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.7e-189 666.4 462 68.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 8.7e-189 664.1 489 64.8
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 1.9e-188 662.9 463 67.8
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 6.2e-187 657.9 487 64.9
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 6.2e-187 657.9 497 63.8
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.1e-186 657.1 496 63.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 2.4e-186 656.0 487 65.1
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 4.0e-186 655.2 461 66.6
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 6.9e-186 654.4 477 64.8
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 2.0e-185 652.9 500 63.8
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.4e-185 652.1 458 66.4
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 3.4e-185 652.1 469 66.3
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.5e-185 651.7 479 64.9
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 5.8e-185 651.4 489 63.6
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.8e-185 651.4 437 69.6
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.6e-185 651.0 470 64.9
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 9.9e-185 650.6 497 64.0
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.2e-184 649.4 472 65.0
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.4e-183 646.7 593 55.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.4e-183 646.0 479 64.1
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 5.4e-183 644.8 477 63.9
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 9.3e-183 644.0 489 63.4
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.7e-182 642.5 472 64.6
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 2.7e-182 642.5 471 64.3
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-181 640.2 479 63.7
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-181 640.2 472 64.2
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-181 640.2 455 67.5
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 6.7e-181 637.9 485 63.3
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 8.7e-181 637.5 468 63.9
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.9e-180 636.3 428 70.8
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 2.5e-180 636.0 511 62.0
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 7.4e-180 634.4 465 64.3
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.8e-179 632.5 498 60.8
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.4e-178 630.2 450 65.8
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.8e-178 629.8 483 63.6
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.8e-178 629.8 519 59.2
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 3.4e-177 625.5 459 63.8
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 3.4e-177 625.5 459 63.8
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 3.4e-177 625.5 459 63.8
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 7.6e-177 624.4 481 63.2
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 9.9e-177 624.0 575 55.3
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 2.9e-176 622.5 478 61.7
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.9e-176 621.7 507 61.1
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 4.9e-176 621.7 478 61.7
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 4.9e-176 621.7 458 66.4
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 6.4e-176 621.3 493 61.1
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-175 620.5 410 70.0
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 9.3e-175 617.5 456 64.7
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.3e-172 608.6 505 59.8
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-172 608.2 373 74.5
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 6.2e-171 604.7 474 60.8
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.7e-168 596.7 500 59.0
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 3.5e-166 589.0 496 58.5
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.1e-164 583.9 646 49.5
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.3e-163 580.5 446 62.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.1e-163 579.7 414 64.7
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.8e-163 579.3 477 60.0
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.5e-161 573.5 416 66.3
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 5.5e-159 565.1 438 63.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.2e-147 524.6 466 56.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 2.6e-140 503.1 473 52.9
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.1e-138 496.1 364 64.8
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.0e-137 493.4 335 70.4
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 5.0e-136 488.8 463 52.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.2e-131 473.4 463 49.0
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.8e-130 470.3 489 47.0
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 6.1e-126 455.3 402 53.0
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 6.8e-125 451.8 492 48.0
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.8e-118 429.9 515 45.2
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.8e-109 400.6 302 63.6
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.1e-101 374.8 270 68.5
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 6.4e-83 312.4 296 53.0
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.1e-72 276.2 218 61.0
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.2e-68 265.0 199 65.8
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 9.6e-55 218.8 213 51.6
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.8e-51 206.8 151 62.9
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 5.9e-44 183.0 326 34.7
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 4.2e-42 176.8 100 80.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 3.7e-38 163.7 106 67.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.5e-36 156.8 148 56.8
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.7e-33 147.5 435 28.5
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 2.0e-31 141.4 111 63.1
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.3e-31 140.6 111 63.1
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 3.1e-29 134.0 110 56.4
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.0e-27 129.0 86 69.8
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 8.0e-25 119.4 75 73.3
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-21 109.0 110 56.4
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 1.4e-21 108.6 99 51.5
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.0e-20 104.8 71 67.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 4.2e-18 97.1 72 58.3
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 6.1e-17 93.2 69 66.7
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 8.0e-17 92.8 62 67.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.6e-12 78.6 47 72.3
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.0e-11 75.9 45 75.6
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 3.2e-10 70.9 83 48.2
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 4.7e-09 67.0 74 48.6
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.8e-08 65.1 61 47.5
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 4.0e-08 63.9 39 69.2
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 1.3e-06 58.9 53 56.6


User provided reference genes

Program Settings