Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 3.0e-309 1064.3 521 100.0
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 3.0e-253 878.2 521 78.3
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 6.3e-251 870.5 514 78.8
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 3.2e-247 858.2 514 78.0
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.2e-246 856.3 520 76.5
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 8.3e-243 843.6 542 73.4
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 5.4e-242 840.9 520 76.9
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 5.0e-240 834.3 520 74.4
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 2.5e-239 832.0 514 74.5
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 5.5e-239 830.9 513 74.5
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 5.2e-237 824.3 515 75.5
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.5e-236 822.8 518 73.4
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 5.7e-236 820.8 515 75.0
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.3e-235 819.7 515 74.6
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 2.8e-235 818.5 520 73.8
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 4.9e-235 817.8 520 72.5
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 8.3e-235 817.0 513 75.0
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 2.4e-234 815.5 534 71.7
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 5.4e-234 814.3 513 74.9
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 2.7e-233 812.0 520 72.5
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 3.5e-233 811.6 516 73.8
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.3e-232 808.9 517 72.3
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 2.9e-232 808.5 518 72.2
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 6.6e-232 807.4 516 72.5
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 8.6e-232 807.0 516 72.3
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.5e-231 806.2 516 72.1
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.3e-231 804.7 515 73.6
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 4.3e-231 804.7 515 74.0
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 7.3e-231 803.9 516 73.4
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 2.1e-230 802.4 516 72.3
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 2.1e-230 802.4 517 72.5
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 2.1e-230 802.4 522 73.2
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 4.7e-230 801.2 516 72.9
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 8.0e-230 800.4 515 73.2
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 8.0e-230 800.4 515 72.0
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.0e-229 800.0 516 71.7
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.8e-229 799.3 515 72.2
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 1.2e-228 796.6 516 72.1
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 2.0e-228 795.8 516 71.9
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 2.6e-228 795.4 516 72.1
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 7.5e-228 793.9 510 72.2
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 9.8e-228 793.5 515 71.8
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 2.9e-227 792.0 508 72.8
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 3.7e-227 791.6 516 71.3
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 3.7e-227 791.6 515 71.7
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 4.9e-227 791.2 515 72.2
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 6.4e-227 790.8 514 72.4
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.9e-226 789.3 517 72.0
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.9e-226 789.3 516 72.9
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 7.0e-226 787.3 519 69.6
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 9.2e-226 786.9 519 68.8
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 2.7e-225 785.4 514 71.8
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 5.0e-224 781.2 500 72.6
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 7.3e-223 777.3 519 67.8
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 4.7e-222 774.6 516 70.5
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 5.2e-221 771.2 574 64.8
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 8.9e-221 770.4 508 71.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 4.4e-220 768.1 515 69.3
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 5.8e-220 767.7 519 67.8
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.7e-219 765.0 519 67.4
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.2e-217 760.0 515 69.9
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.6e-217 759.6 520 67.9
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.1e-217 759.2 518 69.1
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 4.6e-217 758.1 520 67.7
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.0e-217 757.7 520 67.9
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.0e-217 757.7 520 67.9
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 7.8e-217 757.3 520 67.9
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 3.9e-216 755.0 520 67.1
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.5e-215 752.3 488 70.9
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 6.2e-214 747.7 471 73.7
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 5.2e-213 744.6 544 64.7
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.2e-212 743.4 470 73.6
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.4e-212 741.9 545 64.8
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 7.3e-207 724.2 514 68.3
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 3.4e-204 715.3 560 62.9
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.4e-202 709.9 520 65.8
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 3.2e-202 708.8 515 64.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 7.1e-202 707.6 520 66.9
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.7e-201 705.7 520 67.5
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.3e-200 703.4 519 66.5
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 6.6e-200 701.0 436 76.1
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.1e-199 700.3 515 63.7
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 4.3e-199 698.4 521 63.5
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.6e-198 696.4 399 79.9
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 3.1e-197 692.2 520 63.5
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 5.3e-197 691.4 587 60.6
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.9e-195 685.6 578 60.6
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 4.6e-193 678.3 522 60.2
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 6.0e-193 677.9 392 78.1
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.5e-191 672.5 435 71.5
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.6e-190 668.7 685 51.1
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 2.1e-185 652.9 513 64.9
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.1e-185 652.9 549 59.9
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 4.0e-181 638.6 497 64.8
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.6e-180 636.0 514 61.9
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.6e-169 600.1 417 65.9
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 2.2e-163 579.7 492 60.4
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.9e-163 579.3 364 73.6
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 9.7e-159 564.3 526 51.3
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.1e-157 559.3 520 56.5
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.4e-154 550.4 526 51.1
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.5e-154 549.7 333 77.5
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 3.1e-149 532.7 505 53.9
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.2e-148 530.8 306 78.8
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.8e-141 506.9 346 70.8
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 5.7e-135 485.3 518 49.2
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.8e-133 480.3 283 77.7
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.6e-129 466.1 448 51.8
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.5e-127 460.7 350 64.3
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.8e-126 456.4 254 80.3
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 7.0e-125 451.8 548 43.2
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 6.8e-120 435.3 341 62.5
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.6e-111 406.8 286 67.1
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 4.1e-109 399.4 229 79.0
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.5e-106 391.0 231 77.9
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.2e-105 387.9 227 78.4
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.2e-105 387.9 227 78.4
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 4.9e-78 296.2 530 37.0
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 3.5e-76 290.0 166 80.7
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.6e-76 289.7 208 66.3
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.7e-75 287.7 205 68.3
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.1e-72 278.5 238 59.2
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 2.4e-69 267.3 530 33.8
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 3.3e-66 256.9 552 31.9
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 4.3e-66 256.5 169 70.4
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 2.8e-65 253.8 498 36.1
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 6.2e-65 252.7 515 36.5
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.9e-61 241.1 354 42.9
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 7.6e-55 219.2 183 59.0
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 6.3e-49 199.5 262 43.5
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 1.8e-43 181.4 157 59.9
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 5.5e-37 159.8 336 31.8
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.0e-35 155.6 85 78.8
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 2.9e-30 137.5 99 64.6
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.5e-30 136.0 196 41.8
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 4.2e-29 133.7 107 61.7
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 9.4e-29 132.5 102 64.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.0e-27 129.0 103 64.1
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.3e-25 122.1 79 74.7
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.8e-25 120.2 120 49.2
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.5e-23 113.6 85 62.4
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.4e-16 92.0 270 29.3
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.2e-13 80.9 41 78.0
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 4.4e-10 70.5 51 60.8
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.1e-08 65.9 98 41.8
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 7.7e-07 59.7 114 36.0
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 8.6e-06 56.2 44 59.1


User provided reference genes

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