Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 4.2e-139 498.0 256 100.0
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 7.5e-72 274.6 263 56.7
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 5.4e-70 268.5 267 54.3
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 3.5e-69 265.8 266 55.6
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 4.6e-69 265.4 266 55.3
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 7.8e-69 264.6 268 55.2
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 7.3e-67 258.1 275 53.8
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 4.0e-65 252.3 263 50.2
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 1.3e-63 247.3 267 51.7
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 1.3e-60 237.3 250 50.0
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 1.3e-60 237.3 236 50.4
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 1.7e-60 236.9 257 54.5
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 3.0e-60 236.1 255 52.5
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 1.5e-59 233.8 248 52.0
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 1.5e-59 233.8 210 57.1
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 1.9e-59 233.4 246 52.8
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 7.3e-59 231.5 237 52.7
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 9.5e-59 231.1 255 49.8
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 1.2e-58 230.7 222 57.2
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 1.2e-58 230.7 263 50.2
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 1.6e-58 230.3 259 48.3
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.1e-58 229.9 263 50.2
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.8e-58 229.6 263 49.4
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 8.1e-58 228.0 240 53.8
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 1.8e-57 226.9 244 54.1
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.8e-57 226.9 232 55.2
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 2.4e-57 226.5 239 51.5
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 2.0e-56 223.4 219 54.8
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 2.6e-56 223.0 248 52.0
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 1.3e-55 220.7 238 53.8
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 2.2e-55 219.9 249 52.6
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 7.1e-54 214.9 238 50.4
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 1.6e-53 213.8 223 54.7
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.7e-53 213.0 215 54.9
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 4.6e-53 212.2 225 53.8
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 7.8e-53 211.5 210 57.1
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 1.0e-52 211.1 266 43.6
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 3.0e-52 209.5 210 54.8
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 5.1e-52 208.8 228 52.6
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 5.1e-52 208.8 229 52.4
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 6.6e-52 208.4 226 53.1
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.1e-51 207.6 226 52.7
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 1.1e-51 207.6 229 50.7
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 1.9e-51 206.8 225 52.0
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 2.1e-50 203.4 209 54.1
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 2.1e-50 203.4 229 50.7
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 8.1e-50 201.4 241 51.9
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 1.8e-49 200.3 255 45.5
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 1.2e-48 197.6 210 51.9
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.7e-47 193.7 199 54.8
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 2.9e-47 193.0 215 49.3
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 1.1e-46 191.0 212 52.4
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 4.2e-46 189.1 196 54.1
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 9.3e-46 188.0 242 44.2
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 2.1e-45 186.8 230 47.4
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 1.7e-44 183.7 227 48.5
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 2.3e-44 183.3 230 44.3
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 5.1e-44 182.2 232 47.8
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 6.6e-44 181.8 229 49.3
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 1.9e-43 180.3 227 45.4
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 3.3e-43 179.5 235 46.0
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 5.6e-43 178.7 224 46.0
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 7.3e-43 178.3 235 43.4
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 7.3e-43 178.3 235 43.4
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 9.6e-43 177.9 213 48.4
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 9.6e-43 177.9 224 44.6
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 2.8e-42 176.4 246 45.5
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 3.6e-42 176.0 241 43.2
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 4.8e-42 175.6 206 49.0
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 5.8e-40 168.7 235 43.4
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 1.7e-39 167.2 246 42.3
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 4.9e-39 165.6 166 57.2
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 4.3e-35 152.5 143 58.7
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 6.9e-33 145.2 201 45.8
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 1.2e-32 144.4 171 51.5
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 9.9e-32 141.4 165 49.1
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 7.9e-29 131.7 172 44.8
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 2.1e-26 123.6 210 35.2
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 8.2e-26 121.7 158 48.1
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 1.2e-24 117.9 146 49.3
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 1.5e-24 117.5 170 43.5
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 3.4e-24 116.3 167 43.7
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 1.3e-23 114.4 170 45.9
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 1.4e-22 110.9 87 64.4
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 1.9e-22 110.5 141 46.1
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 1.2e-21 107.8 138 48.6
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.1e-21 107.1 84 64.3
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 2.7e-21 106.7 138 47.8
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 3.0e-20 103.2 175 38.3
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 3.9e-20 102.8 213 32.9
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 5.1e-20 102.4 188 36.7
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 9.7e-19 98.2 176 39.8
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.8e-18 96.7 82 62.2
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 4.1e-17 92.8 183 35.5
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.0e-16 90.5 73 63.0
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 4.5e-16 89.4 127 42.5
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.9e-15 86.7 69 60.9
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 9.4e-14 81.6 88 51.1
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 2.1e-13 80.5 64 67.2
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 8.8e-12 75.1 175 32.0
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 2.5e-11 73.6 95 36.8
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 9.7e-11 71.6 89 39.3
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 2.8e-10 70.1 71 53.5
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.1e-09 68.2 112 39.3
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 2.0e-08 63.9 78 47.4
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 5.0e-07 59.3 92 37.0
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 8.5e-07 58.5 134 31.3
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 8.5e-07 58.5 83 36.1
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 1.1e-06 58.2 94 34.0
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 1.1e-06 58.2 94 33.0
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 1.1e-06 58.2 97 34.0
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 1.4e-06 57.8 102 30.4
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 1.4e-06 57.8 91 35.2
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 1.4e-06 57.8 85 35.3
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 1.9e-06 57.4 83 34.9
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.9e-06 57.4 83 34.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.9e-06 57.4 83 34.9
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 1.9e-06 57.4 83 34.9
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 1.9e-06 57.4 81 37.0
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 1.9e-06 57.4 81 37.0
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 1.9e-06 57.4 85 36.5
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 2.5e-06 57.0 81 35.8
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 2.5e-06 57.0 81 37.0
AagrBONN_evm.TU.Sc2ySwM_368.1216 Anthoceros agrestis HOM05D003003 ORTHO05D009423 3.2e-06 56.6 83 33.7
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 3.2e-06 56.6 90 33.3
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 3.2e-06 56.6 90 35.6
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 3.2e-06 56.6 81 34.6
Pp3c8_3980 Physcomitrium patens HOM05D003003 ORTHO05D009423 3.2e-06 56.6 86 36.0
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 3.2e-06 56.6 81 37.0
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 3.2e-06 56.6 81 35.8
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 3.2e-06 56.6 81 35.8
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 3.2e-06 56.6 81 34.6
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 3.2e-06 56.6 81 34.6
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 3.2e-06 56.6 90 34.4
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 4.2e-06 56.2 81 35.8
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 4.2e-06 56.2 136 29.4
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 4.2e-06 56.2 85 35.3
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 4.2e-06 56.2 81 38.3
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 5.5e-06 55.8 81 34.6
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 5.5e-06 55.8 81 34.6
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 5.5e-06 55.8 81 34.6
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 5.5e-06 55.8 80 37.5
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 5.5e-06 55.8 81 34.6
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 5.5e-06 55.8 134 31.3
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 5.5e-06 55.8 81 35.8
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 5.5e-06 55.8 94 33.0
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 5.5e-06 55.8 81 35.8
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 5.5e-06 55.8 81 35.8
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 5.5e-06 55.8 80 36.2
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 7.2e-06 55.5 80 36.2
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 7.2e-06 55.5 81 35.8
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 7.2e-06 55.5 80 36.2
AUR62029798 Chenopodium quinoa HOM05D003003 ORTHO05D008343 7.2e-06 55.5 80 36.2
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 7.2e-06 55.5 81 35.8
Glyma.02G126500 Glycine max HOM05D003003 ORTHO05D009423 7.2e-06 55.5 81 35.8
MBI15_g27839_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D009423 7.2e-06 55.5 88 34.1
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 7.2e-06 55.5 81 35.8
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 7.2e-06 55.5 81 34.6
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 7.2e-06 55.5 134 29.9
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 7.2e-06 55.5 97 34.0
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 9.4e-06 55.1 134 32.8
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 9.4e-06 55.1 80 35.0
MELO3C012182.2 Cucumis melo HOM05D003003 ORTHO05D009423 9.4e-06 55.1 81 38.3
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 9.4e-06 55.1 81 35.8
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 9.4e-06 55.1 81 34.6
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 9.4e-06 55.1 81 34.6


User provided reference genes

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