Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 5.1e-102 374.4 186 100.0
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.1e-83 313.5 186 82.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-83 313.2 186 82.3
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-83 313.2 186 82.3
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 3.1e-83 312.0 186 81.7
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.6e-82 308.9 186 80.6
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 5.8e-82 307.8 186 80.1
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 2.7e-79 298.9 186 78.0
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.6e-76 289.7 186 76.3
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 6.2e-76 287.7 187 74.9
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 4.0e-75 285.0 185 75.1
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 6.9e-75 284.3 186 73.7
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.2e-74 283.5 186 75.3
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.0e-74 282.7 192 72.4
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.5e-74 281.6 186 72.6
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.0e-73 280.4 187 73.8
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.3e-73 280.0 186 72.6
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.9e-73 278.9 186 71.5
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 8.4e-73 277.3 186 73.1
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 8.4e-73 277.3 187 74.3
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 2.5e-72 275.8 186 72.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.2e-72 275.0 187 72.2
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.6e-71 273.1 185 70.3
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.6e-71 273.1 186 72.0
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.6e-71 273.1 186 73.7
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 2.1e-71 272.7 186 72.6
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.7e-71 272.3 186 72.6
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.3e-70 270.0 186 69.4
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.8e-70 269.6 186 72.6
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.9e-70 268.5 186 70.4
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 6.7e-70 267.7 186 72.0
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 8.7e-70 267.3 186 70.4
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 8.7e-70 267.3 183 69.9
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.1e-69 266.9 182 72.5
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.5e-69 266.5 187 70.1
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.9e-69 266.2 187 70.6
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 3.3e-69 265.4 187 69.0
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.3e-69 265.0 187 69.0
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 7.4e-69 264.2 186 70.4
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 7.4e-69 264.2 182 71.4
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.3e-68 263.5 186 71.5
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.6e-68 263.1 186 70.4
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.6e-68 263.1 186 70.4
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 2.2e-68 262.7 186 71.0
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 3.7e-68 261.9 182 70.9
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 6.3e-68 261.2 185 68.6
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 8.2e-68 260.8 182 70.3
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 8.2e-68 260.8 182 71.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 8.2e-68 260.8 186 69.4
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.8e-67 259.6 182 69.8
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.8e-67 259.6 182 69.8
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.8e-67 259.6 182 69.8
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.4e-67 259.2 186 68.3
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 4.1e-67 258.5 187 69.5
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.2e-66 256.9 186 68.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.2e-66 256.9 186 67.2
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.5e-66 256.5 187 67.9
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 4.5e-66 255.0 178 70.2
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 7.7e-66 254.2 186 69.4
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 7.7e-66 254.2 182 69.2
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.0e-65 253.8 149 81.9
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.7e-65 253.1 187 67.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.7e-65 253.1 184 69.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.7e-65 253.1 183 68.3
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 2.2e-65 252.7 186 66.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 67.2
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 5.0e-65 251.5 187 67.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 5.0e-65 251.5 186 66.1
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 8.5e-65 250.8 187 65.8
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.1e-64 250.4 171 70.2
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-64 249.6 183 66.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 3.2e-64 248.8 207 61.8
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 5.5e-64 248.1 182 68.1
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 5.5e-64 248.1 182 68.1
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.5e-64 248.1 187 65.8
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 9.4e-64 247.3 183 65.6
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.2e-63 246.9 179 68.7
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.7e-63 245.7 183 66.1
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 3.6e-63 245.4 187 66.8
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 3.6e-63 245.4 183 63.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 4.6e-63 245.0 171 69.6
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 6.1e-63 244.6 187 66.8
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.3e-62 242.7 183 67.8
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 2.3e-62 242.7 183 65.0
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 5.1e-62 241.5 186 66.7
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 6.7e-62 241.1 183 63.9
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 8.8e-62 240.7 183 67.8
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.5e-61 240.0 181 66.9
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 8.2e-60 234.2 180 65.0
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.1e-59 233.8 186 62.9
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.4e-59 233.4 186 64.0
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.8e-59 233.0 184 62.0
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.0e-58 229.6 150 75.3
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 4.5e-58 228.4 186 64.5
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 4.5e-58 228.4 184 60.9
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.0e-57 227.3 184 59.8
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.0e-57 227.3 184 61.4
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.7e-57 226.5 184 60.3
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 2.2e-57 226.1 189 62.4
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 2.2e-57 226.1 189 61.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.2e-57 226.1 189 61.9
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.2e-57 226.1 189 61.9
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 3.8e-57 225.3 189 61.9
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 5.0e-57 224.9 186 61.8
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 3.2e-56 222.2 184 60.9
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 3.2e-56 222.2 189 60.3
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 4.2e-56 221.9 164 68.3
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.6e-55 218.8 185 61.1
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.4e-53 211.8 149 71.8
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.7e-52 209.9 200 60.5
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 4.8e-52 208.4 183 59.6
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 3.8e-49 198.7 186 59.7
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 5.0e-49 198.4 188 57.4
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 5.0e-49 198.4 184 52.7
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 9.4e-48 194.1 204 53.9
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.1e-47 193.0 183 51.4
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 6.1e-47 191.4 148 62.8
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.0e-46 189.1 168 61.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 3.9e-46 188.7 183 50.8
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 5.2e-46 188.3 150 62.7
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 7.4e-45 184.5 166 60.2
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.7e-44 183.3 182 50.5
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.2e-42 177.2 168 58.9
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 5.0e-41 171.8 187 50.8
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 8.0e-39 164.5 103 72.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 8.0e-39 164.5 183 46.4
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.0e-37 159.8 184 46.2
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.6e-37 159.5 112 65.2
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.3e-36 157.1 185 41.6
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.3e-28 130.6 165 46.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 7.0e-27 124.8 118 53.4
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.0e-21 106.7 98 58.2
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.0e-21 106.7 104 51.0
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 8.3e-20 101.3 71 66.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.4e-19 100.5 133 45.1
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 7.0e-19 98.2 189 30.7
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.2e-18 97.4 62 71.0
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 2.3e-17 93.2 167 33.5
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-16 90.9 72 58.3
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.6e-15 87.0 83 59.0
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.2e-11 72.8 177 29.9
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 1.0e-09 67.8 142 31.0
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 3.3e-08 62.8 38 71.1


User provided reference genes

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