Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 4.9e-143 511.1 261 100.0
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 5.7e-83 311.6 259 61.4
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 9.7e-83 310.8 257 62.6
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 2.8e-82 309.3 255 65.1
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 1.1e-81 307.4 263 62.7
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.4e-81 306.2 255 63.9
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.2e-79 299.7 260 62.3
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 2.9e-79 299.3 236 67.8
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.1e-78 297.4 222 69.4
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 1.9e-78 296.6 260 63.5
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.5e-75 287.0 251 60.6
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 7.4e-75 284.6 259 58.7
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 1.7e-74 283.5 260 58.1
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.7e-74 283.5 257 61.1
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 2.8e-74 282.7 253 61.7
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 2.8e-74 282.7 258 60.1
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.8e-74 282.7 257 60.3
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 4.8e-74 282.0 257 59.5
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 8.2e-74 281.2 242 62.8
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 8.2e-74 281.2 249 59.0
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.4e-73 280.4 235 61.7
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 2.4e-73 279.6 241 61.8
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 5.3e-73 278.5 259 58.3
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.2e-72 277.3 257 58.8
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 2.0e-72 276.6 257 58.8
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.0e-72 276.6 253 57.7
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 3.4e-72 275.8 268 57.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.4e-72 275.8 266 57.9
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.4e-72 275.8 220 62.7
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 4.5e-72 275.4 223 64.6
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 5.9e-72 275.0 253 60.5
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 7.7e-72 274.6 232 63.8
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.0e-71 274.2 257 58.4
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.0e-71 274.2 220 62.7
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.0e-71 274.2 254 58.7
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 2.2e-71 273.1 259 57.5
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 2.2e-71 273.1 220 61.8
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.9e-70 270.0 230 61.3
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 4.2e-70 268.9 268 56.7
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 4.2e-70 268.9 235 58.3
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 4.2e-70 268.9 219 63.9
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 4.2e-70 268.9 221 62.4
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 5.5e-70 268.5 259 56.0
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.2e-69 267.3 264 57.6
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 4.7e-69 265.4 257 56.0
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 1.8e-68 263.5 236 58.9
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.8e-68 263.5 233 60.5
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 3.9e-68 262.3 234 59.0
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.7e-68 261.5 258 57.0
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 6.7e-68 261.5 257 56.4
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.1e-67 260.8 257 55.3
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.5e-67 260.4 257 56.0
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 1.5e-67 260.4 278 52.5
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.5e-67 260.4 246 57.3
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 2.0e-67 260.0 239 59.4
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 2.6e-67 259.6 261 56.3
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 2.6e-67 259.6 252 56.0
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 9.7e-67 257.7 229 59.0
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 2.2e-66 256.5 216 59.3
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 2.8e-66 256.1 258 55.0
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 6.3e-66 255.0 253 54.9
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 6.3e-66 255.0 253 54.9
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.1e-65 254.2 258 54.7
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 4.1e-65 252.3 237 57.8
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 4.1e-65 252.3 226 58.0
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 3.5e-64 249.2 239 56.9
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 5.9e-64 248.4 253 54.5
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.0e-63 247.7 256 53.9
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 1.3e-63 247.3 297 49.2
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.7e-63 246.9 249 53.4
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 8.5e-63 244.6 250 54.8
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 1.1e-62 244.2 208 62.5
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 1.6e-61 240.4 254 52.0
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 2.7e-61 239.6 250 55.2
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 3.6e-61 239.2 254 51.6
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 4.7e-61 238.8 269 52.4
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 1.0e-60 237.7 228 58.3
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 1.4e-60 237.3 254 50.4
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 3.0e-60 236.1 215 59.5
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 9.7e-59 231.1 244 55.3
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 2.2e-58 229.9 256 51.2
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 8.2e-58 228.0 222 58.1
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 5.3e-57 225.3 266 50.4
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 2.1e-53 213.4 252 51.2
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 1.5e-51 207.2 189 60.8
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 1.3e-50 204.1 260 46.9
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.8e-50 203.0 221 54.8
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.7e-50 202.6 216 52.3
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 4.1e-49 199.1 219 51.1
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 7.7e-48 194.9 217 52.1
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 1.7e-47 193.7 304 41.4
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 5.0e-47 192.2 256 44.9
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.9e-46 190.3 262 45.0
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 7.2e-46 188.3 251 45.8
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 9.4e-46 188.0 255 47.8
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 9.4e-46 188.0 251 45.4
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 1.2e-45 187.6 255 47.1
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.6e-45 187.2 272 44.9
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.6e-45 187.2 272 44.9
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 2.1e-45 186.8 254 46.9
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 2.7e-45 186.4 156 60.3
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.6e-45 186.0 190 54.2
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 6.1e-45 185.3 214 48.6
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 1.4e-44 184.1 195 50.8
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 2.3e-44 183.3 251 45.0
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 6.8e-44 181.8 195 50.3
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.5e-43 180.6 245 45.7
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 2.0e-43 180.3 245 45.7
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 2.0e-43 180.3 245 46.1
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 6.3e-42 175.3 120 73.3
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 2.4e-41 173.3 175 53.1
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.6e-37 160.6 89 87.6
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 8.0e-37 158.3 224 46.0
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.0e-31 141.4 94 71.3
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 5.0e-31 139.0 157 49.0
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 2.1e-29 133.7 176 46.0
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 4.1e-25 119.4 72 77.8
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 9.2e-25 118.2 73 76.7
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 7.8e-24 115.2 179 41.9
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 5.0e-23 112.5 241 35.7
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.9e-22 110.5 111 57.7
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 2.5e-22 110.2 113 46.9
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 5.6e-22 109.0 157 44.6
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 2.8e-21 106.7 137 47.4
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 2.8e-21 106.7 197 39.1
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 8.3e-18 95.1 54 87.0
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 1.9e-17 94.0 207 32.9
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 6.0e-16 89.0 63 65.1
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 3.0e-15 86.7 48 87.5
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 4.1e-09 66.2 114 37.7
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 1.2e-08 64.7 68 45.6
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 2.1e-08 63.9 106 38.7
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 8.6e-07 58.5 84 42.9


User provided reference genes

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