Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 6.8e-44 181.0 153 100.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 7.1e-17 91.3 68 64.7
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.2e-16 90.5 72 68.1
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 4.6e-16 88.6 108 67.6
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 7.8e-16 87.8 59 69.5
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.3e-15 87.0 61 70.5
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.7e-15 86.7 61 72.1
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 2.3e-15 86.3 41 92.7
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.3e-15 86.3 45 86.7
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 5.1e-15 85.1 45 84.4
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 5.1e-15 85.1 45 84.4
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 5.1e-15 85.1 45 84.4
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 5.1e-15 85.1 69 65.2
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 6.6e-15 84.7 107 51.4
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.1e-14 84.0 80 57.5
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.1e-14 84.0 61 68.9
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.5e-14 83.6 43 88.4
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.5e-14 83.6 70 61.4
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.5e-14 82.8 110 47.3
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.5e-14 82.8 42 88.1
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.5e-14 82.8 111 47.7
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.3e-14 82.4 41 90.2
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 3.3e-14 82.4 38 94.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.6e-14 81.6 61 70.5
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 9.5e-14 80.9 108 49.1
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.2e-13 80.5 69 60.9
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.2e-13 80.5 105 54.3
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.6e-13 80.1 74 56.8
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.6e-13 80.1 42 81.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.1e-13 79.7 42 88.1
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.8e-13 79.3 41 85.4
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 2.8e-13 79.3 43 86.0
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 2.8e-13 79.3 43 86.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.6e-13 79.0 42 83.3
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.6e-13 79.0 42 83.3
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 3.6e-13 79.0 46 76.1
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 3.6e-13 79.0 45 75.6
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 3.6e-13 79.0 69 59.4
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 4.7e-13 78.6 54 70.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 6.2e-13 78.2 36 97.2
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 6.2e-13 78.2 37 94.6
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.1e-13 77.8 43 81.4
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.1e-13 77.8 43 81.4
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 8.1e-13 77.8 41 85.4
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-12 77.4 77 54.5
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.4e-12 77.0 44 81.8
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.4e-12 77.0 74 58.1
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.4e-12 77.0 71 56.3
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.4e-12 77.0 72 62.5
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.4e-12 77.0 52 75.0
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.8e-12 76.6 62 69.4
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.8e-12 76.6 37 89.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.8e-12 76.6 68 58.8
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.3e-12 76.3 43 79.1
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.3e-12 76.3 70 57.1
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.3e-12 76.3 38 89.5
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 3.1e-12 75.9 44 77.3
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.1e-12 75.9 43 79.1
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 3.1e-12 75.9 44 81.8
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 3.1e-12 75.9 51 74.5
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 4.0e-12 75.5 46 78.3
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 5.2e-12 75.1 69 59.4
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 5.2e-12 75.1 73 57.5
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 5.2e-12 75.1 69 58.0
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 6.8e-12 74.7 45 73.3
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 6.8e-12 74.7 52 71.2
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 6.8e-12 74.7 46 73.9
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 6.8e-12 74.7 45 75.6
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 6.8e-12 74.7 45 75.6
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 6.8e-12 74.7 36 91.7
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 8.9e-12 74.3 36 88.9
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 8.9e-12 74.3 36 88.9
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.9e-12 74.3 36 91.7
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 8.9e-12 74.3 74 55.4
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 8.9e-12 74.3 42 81.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 8.9e-12 74.3 42 81.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-11 73.9 67 56.7
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-11 73.9 47 76.6
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-11 73.9 67 56.7
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.2e-11 73.9 67 56.7
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.2e-11 73.9 47 76.6
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.2e-11 73.9 36 91.7
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.2e-11 73.9 43 72.1
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.5e-11 73.6 76 51.3
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.5e-11 73.6 76 51.3
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.5e-11 73.6 36 88.9
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 2.0e-11 73.2 35 94.3
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 2.0e-11 73.2 40 82.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.0e-11 73.2 33 97.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 2.6e-11 72.8 107 43.9
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.6e-11 72.8 36 88.9
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.6e-11 72.8 36 88.9
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.6e-11 72.8 36 88.9
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.6e-11 72.8 36 88.9
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.6e-11 72.8 36 88.9
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 2.6e-11 72.8 38 84.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 3.4e-11 72.4 36 86.1
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 3.4e-11 72.4 41 80.5
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 4.4e-11 72.0 42 76.2
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 5.8e-11 71.6 36 86.1
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 7.6e-11 71.2 33 90.9
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 7.6e-11 71.2 42 76.2
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 9.9e-11 70.9 69 53.6
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.3e-10 70.5 38 86.8
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.7e-10 70.1 37 86.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.7e-10 70.1 33 90.9
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.7e-10 70.1 33 90.9
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.9e-10 69.3 63 55.6
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.9e-10 69.3 43 74.4
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.9e-10 69.3 33 90.9
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.9e-10 69.3 33 90.9
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.8e-10 68.9 33 87.9
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.9e-10 68.6 47 63.8
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.4e-10 68.2 42 71.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 6.4e-10 68.2 70 51.4
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 8.4e-10 67.8 40 75.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.1e-09 65.5 34 82.4
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.2e-08 63.9 66 54.5


User provided reference genes

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