Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 8.6e-42 173.3 93 100.0
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.4e-28 129.4 88 72.7
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.4e-28 128.6 89 69.7
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.1e-28 127.9 86 70.9
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 5.4e-28 127.5 87 73.6
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 7.1e-28 127.1 85 70.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 7.1e-28 127.1 83 71.1
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 9.2e-28 126.7 85 74.1
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.6e-27 125.9 85 71.8
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.6e-27 125.9 85 71.8
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.6e-27 125.9 86 72.1
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.1e-27 125.6 85 71.8
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 2.1e-27 125.6 85 71.8
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.1e-27 125.6 85 71.8
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 2.7e-27 125.2 83 72.3
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 3.5e-27 124.8 85 71.8
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 3.5e-27 124.8 85 70.6
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.5e-27 124.8 85 70.6
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.6e-27 124.4 85 70.6
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 4.6e-27 124.4 85 70.6
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 6.0e-27 124.0 85 71.8
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 6.0e-27 124.0 85 69.4
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 6.0e-27 124.0 85 69.4
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 6.0e-27 124.0 85 69.4
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 7.8e-27 123.6 86 70.9
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.8e-27 123.6 86 70.9
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 7.8e-27 123.6 85 70.6
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.0e-26 123.2 85 69.4
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.0e-26 123.2 86 69.8
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.3e-26 122.9 87 67.8
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 1.3e-26 122.9 81 75.3
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.7e-26 122.5 83 75.9
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.3e-26 122.1 86 67.4
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 3.0e-26 121.7 87 69.0
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 3.9e-26 121.3 86 66.3
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.9e-26 121.3 84 69.0
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.9e-26 121.3 86 69.8
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 3.9e-26 121.3 84 67.9
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 5.1e-26 120.9 89 68.5
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 6.6e-26 120.6 85 67.1
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 6.6e-26 120.6 85 69.4
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 6.6e-26 120.6 86 66.3
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 8.6e-26 120.2 83 67.5
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 8.6e-26 120.2 85 67.1
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.1e-25 119.8 85 68.2
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.1e-25 119.8 87 67.8
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 1.1e-25 119.8 85 65.9
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.1e-25 119.8 92 68.5
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.5e-25 119.4 88 63.6
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 1.5e-25 119.4 85 70.6
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.5e-25 119.4 86 67.4
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.9e-25 119.0 86 67.4
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.3e-25 118.2 84 65.5
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.3e-25 117.9 84 65.5
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 5.6e-25 117.5 84 66.7
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 5.6e-25 117.5 86 68.6
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 9.5e-25 116.7 82 65.9
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.5e-25 116.7 85 67.1
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 9.5e-25 116.7 87 66.7
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.6e-24 115.9 86 65.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 2.1e-24 115.5 83 69.9
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 2.8e-24 115.2 81 66.7
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.6e-24 114.8 85 67.1
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 3.6e-24 114.8 85 65.9
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 4.7e-24 114.4 87 62.1
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.7e-24 114.4 85 65.9
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 4.7e-24 114.4 85 65.9
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 4.7e-24 114.4 87 67.8
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 6.2e-24 114.0 85 65.9
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 6.2e-24 114.0 83 65.1
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 8.1e-24 113.6 86 60.5
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 8.1e-24 113.6 85 62.4
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.8e-23 112.5 86 64.0
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.3e-23 112.1 87 66.7
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.1e-23 111.7 86 64.0
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 5.2e-23 110.9 85 63.5
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 6.8e-23 110.5 87 60.9
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 8.9e-23 110.2 81 66.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.5e-22 109.4 86 60.5
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.0e-22 109.0 82 63.4
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 5.8e-22 107.5 79 69.6
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 5.8e-22 107.5 86 58.1
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 1.3e-21 106.3 86 59.3
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.2e-21 105.5 83 57.8
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 2.9e-21 105.1 86 58.1
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 2.9e-21 105.1 86 58.1
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 4.9e-21 104.4 78 66.7
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.1e-20 103.2 69 72.5
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 1.1e-20 103.2 84 64.3
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.9e-20 102.4 86 57.0
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.9e-20 102.4 86 57.0
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.4e-20 102.1 86 55.8
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 3.2e-20 101.7 69 72.5
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 9.2e-20 100.1 80 63.8
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.6e-19 99.4 86 52.3
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 3.0e-18 95.1 62 72.6
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.9e-18 94.7 61 75.4
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.9e-18 94.7 85 51.8
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 5.1e-18 94.4 70 61.4
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 6.6e-18 94.0 86 51.2
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.1e-17 93.2 66 69.7
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 2.5e-17 92.0 82 56.1
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 3.3e-17 91.7 80 56.2
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.2e-16 89.7 82 52.4
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-16 89.4 81 53.1
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-16 89.4 81 53.1
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.6e-16 89.4 82 53.7
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 2.1e-16 89.0 82 54.9
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 3.6e-16 88.2 80 55.0
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 4.7e-16 87.8 81 50.6
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 6.2e-16 87.4 82 52.4
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 6.2e-16 87.4 83 51.8
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-15 86.7 82 51.2
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-15 85.9 82 51.2
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.8e-15 85.9 82 51.2
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.1e-15 85.1 81 50.6
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 3.1e-15 85.1 81 50.6
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-15 84.7 82 50.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 4.0e-15 84.7 73 56.2
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 6.8e-15 84.0 81 49.4
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 6.8e-15 84.0 81 49.4
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.5e-14 82.8 81 49.4
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.5e-14 82.8 81 49.4
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.0e-14 82.4 84 51.2
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 2.0e-14 82.4 81 50.6
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 2.6e-14 82.0 81 49.4
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 2.6e-14 82.0 81 49.4
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 2.6e-14 82.0 81 49.4
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 2.6e-14 82.0 82 48.8
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.6e-14 80.5 85 48.2
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 9.9e-14 80.1 58 69.0
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.7e-13 79.3 81 48.1
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.7e-13 79.3 81 46.9
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.7e-13 79.3 81 48.1
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.7e-13 79.3 81 48.1
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 3.8e-13 78.2 87 46.0
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 8.4e-13 77.0 59 59.3
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 4.2e-12 74.7 72 51.4
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 4.2e-12 74.7 72 51.4
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 5.4e-12 74.3 72 51.4
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 7.1e-12 73.9 81 49.4
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 9.3e-12 73.6 72 50.0
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 2.7e-11 72.0 61 68.9
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 7.8e-11 70.5 87 44.8
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.5e-09 66.2 79 48.1
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.6e-08 62.8 64 48.4
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.4e-07 58.9 69 42.0
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 5.3e-07 57.8 37 81.1
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 9.0e-07 57.0 38 73.7
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.5e-06 56.2 84 35.7


User provided reference genes

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