Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.8e-125 452.6 228 100.0
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.4e-114 415.6 228 90.4
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.4e-109 399.8 228 84.2
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.1e-109 398.7 228 83.3
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.4e-106 389.0 228 82.0
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.4e-106 389.0 230 85.2
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.1e-105 386.0 230 83.9
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 6.0e-105 384.4 226 83.2
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.8e-105 384.0 227 84.1
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.0e-104 383.6 226 81.9
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.3e-104 382.5 230 81.7
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 3.0e-104 382.1 227 83.7
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 3.9e-104 381.7 227 83.7
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-103 380.2 227 83.3
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.9e-103 379.4 228 78.9
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.6e-103 377.1 228 78.5
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.3e-102 376.7 228 79.4
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.6e-102 376.3 231 82.3
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.6e-102 375.2 228 78.9
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 6.2e-102 374.4 228 81.6
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-101 373.2 221 80.5
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.4e-101 372.5 228 81.1
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 3.1e-101 372.1 224 79.5
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.1e-101 372.1 224 80.4
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 4.0e-101 371.7 228 77.6
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 5.3e-101 371.3 225 83.6
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.2e-100 370.2 221 79.2
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.2e-100 370.2 228 77.2
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.5e-100 369.8 228 81.6
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 2.0e-100 369.4 226 77.4
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.6e-100 369.0 228 77.6
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.6e-100 369.0 228 77.2
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.4e-100 368.6 228 77.6
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 3.4e-100 368.6 228 77.6
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.4e-100 368.6 226 77.9
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.5e-100 368.2 228 77.2
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 4.5e-100 368.2 226 76.5
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.7e-99 366.3 226 77.9
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.7e-99 366.3 226 76.5
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.8e-99 365.2 228 78.9
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 3.8e-99 365.2 226 76.5
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-99 364.8 226 76.5
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 4.9e-99 364.8 228 75.9
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 6.4e-99 364.4 226 76.1
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.4e-99 364.4 219 80.4
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 6.4e-99 364.4 228 77.2
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 8.4e-99 364.0 226 77.0
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 8.4e-99 364.0 228 77.6
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 8.4e-99 364.0 226 81.4
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 8.4e-99 364.0 228 78.5
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-98 362.5 228 76.8
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 3.2e-98 362.1 227 75.8
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 3.2e-98 362.1 228 78.5
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 4.2e-98 361.7 226 77.0
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 5.4e-98 361.3 232 78.0
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 7.1e-98 360.9 232 79.3
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.6e-97 359.8 228 77.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-97 359.8 231 75.3
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.7e-97 359.0 226 74.8
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.7e-97 359.0 226 74.8
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.5e-97 358.6 228 76.8
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 3.5e-97 358.6 228 78.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.5e-97 358.6 227 76.2
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 4.6e-97 358.2 226 74.3
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 6.0e-97 357.8 223 76.2
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.0e-96 357.1 217 82.0
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.3e-96 355.9 215 82.3
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 2.3e-96 355.9 226 75.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 3.9e-96 355.1 242 75.2
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 3.9e-96 355.1 230 75.2
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 5.1e-96 354.8 230 75.2
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.1e-96 354.8 219 78.5
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 6.7e-96 354.4 225 78.2
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 8.7e-96 354.0 225 78.7
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.1e-95 353.6 223 75.8
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.1e-95 353.6 224 78.6
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.1e-95 353.6 220 78.2
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.5e-95 353.2 223 75.3
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.9e-95 352.8 230 74.8
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.9e-95 352.8 225 78.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.9e-95 352.8 219 78.1
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 3.3e-95 352.1 224 75.9
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 5.6e-95 351.3 226 73.0
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.3e-94 350.1 224 76.3
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.3e-94 350.1 224 76.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.3e-94 350.1 224 76.3
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.6e-94 349.7 224 75.9
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.6e-94 349.7 224 75.9
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.1e-94 349.4 225 74.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-94 349.4 224 75.0
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-94 349.4 224 75.0
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.7e-94 348.6 227 77.5
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 3.7e-94 348.6 217 78.3
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.8e-94 348.2 215 78.6
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-93 347.1 227 77.1
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.4e-93 346.7 224 75.9
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.8e-93 346.3 225 74.2
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.0e-92 342.8 205 79.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 2.0e-92 342.8 224 75.0
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 3.4e-92 342.0 217 78.8
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 7.6e-92 340.9 204 78.9
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.3e-91 340.1 224 74.6
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-91 339.7 217 74.7
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.9e-91 339.0 204 76.5
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.9e-91 338.2 263 68.4
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 6.4e-91 337.8 227 74.9
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.9e-90 336.3 224 75.4
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 7.1e-90 334.3 206 76.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 6.0e-89 331.3 215 76.7
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 7.9e-89 330.9 227 74.0
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 3.9e-88 328.6 208 78.4
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 6.7e-88 327.8 202 75.2
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.5e-87 326.6 217 72.8
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-87 326.2 209 74.6
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.9e-87 326.2 209 74.6
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 2.5e-87 325.9 204 76.0
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 4.3e-87 325.1 210 72.4
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.3e-86 323.6 230 72.6
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.4e-85 319.3 204 73.0
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 5.3e-85 318.2 252 67.1
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 9.0e-85 317.4 226 70.4
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 4.5e-84 315.1 211 73.0
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 5.8e-84 314.7 209 73.2
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.7e-83 313.2 202 73.3
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.6e-78 296.6 211 67.8
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 2.2e-78 296.2 202 69.8
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 2.8e-78 295.8 186 79.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.8e-78 295.0 192 76.0
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 8.2e-78 294.3 210 68.6
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.1e-77 293.9 216 67.6
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 1.8e-77 293.1 213 66.7
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.6e-76 289.3 208 70.7
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.7e-76 287.7 228 66.7
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 7.2e-74 281.2 228 64.9
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.0e-72 277.3 175 75.4
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 8.8e-72 274.2 221 64.3
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 7.4e-71 271.2 224 62.1
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.7e-70 268.9 206 66.0
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 3.4e-68 262.3 224 61.2
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.4e-68 262.3 230 59.6
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 7.7e-68 261.2 214 62.6
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-67 260.4 159 78.6
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 6.5e-67 258.1 160 79.4
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 7.2e-66 254.6 197 66.5
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.6e-63 246.1 208 63.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.3e-62 243.8 152 79.6
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 8.2e-62 241.1 213 59.2
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 3.1e-61 239.2 214 56.5
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-59 233.8 227 58.6
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 5.0e-59 231.9 221 55.7
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 5.5e-58 228.4 171 69.6
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.5e-58 228.4 185 64.3
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.1e-57 226.5 222 53.6
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.0e-56 224.2 212 56.6
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 7.0e-53 211.5 211 50.7
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-43 180.6 117 78.6
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.2e-43 179.9 233 47.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 5.0e-43 178.7 200 54.5
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 3.2e-42 176.0 237 44.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.5e-39 167.2 105 72.4
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.3e-38 164.1 239 43.1
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.4e-37 160.6 111 66.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 4.5e-36 155.6 99 75.8
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 5.5e-34 148.7 217 40.6
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 9.5e-34 147.9 119 68.1
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.4e-31 139.0 123 61.8
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 2.3e-27 126.7 78 80.8
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.9e-27 125.9 157 41.4
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 5.6e-26 122.1 79 72.2
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 8.9e-24 114.8 83 71.1
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.6e-17 92.8 73 64.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 3.6e-17 92.8 204 30.9
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.6e-12 77.4 105 44.8
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 8.9e-08 61.6 77 50.6
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 8.9e-08 61.6 40 62.5


User provided reference genes

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