Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 9.8e-234 813.1 426 100.0
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 7.1e-168 594.3 403 76.7
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.6e-167 593.2 404 77.5
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.5e-165 585.9 399 75.9
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.3e-165 585.5 399 75.9
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.8e-163 579.7 412 73.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.4e-163 579.3 407 74.0
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 4.1e-163 578.6 403 75.4
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.5e-162 576.6 412 72.6
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 4.5e-162 575.1 403 74.4
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 2.2e-161 572.8 404 74.3
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.2e-160 568.9 396 74.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 5.5e-160 568.2 385 77.4
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.2e-159 567.0 408 74.5
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.7e-159 565.8 419 73.3
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.6e-159 565.1 413 72.2
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.6e-159 565.1 399 73.4
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 6.1e-159 564.7 413 72.4
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.9e-159 564.3 403 73.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.0e-158 563.9 403 73.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.4e-158 563.5 405 72.8
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 5.1e-158 561.6 402 74.9
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 5.1e-158 561.6 415 71.1
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-157 560.5 403 73.2
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.3e-157 558.9 418 72.0
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 4.3e-157 558.5 403 73.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 7.4e-157 557.8 404 73.3
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.8e-156 555.8 402 73.1
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.7e-156 555.4 405 72.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.8e-156 555.1 404 72.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 8.2e-156 554.3 403 72.7
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.1e-155 553.9 410 71.0
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-155 552.7 404 72.8
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.3e-155 551.6 401 72.8
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 6.9e-155 551.2 404 73.0
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.4e-154 548.9 407 73.5
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.3e-153 547.0 429 68.5
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 6.5e-153 544.7 411 71.5
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 8.5e-153 544.3 407 72.2
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.9e-152 543.1 414 70.5
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.2e-151 540.4 398 71.4
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.6e-151 540.0 396 70.5
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.7e-151 538.5 389 72.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.7e-151 538.5 402 71.4
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.1e-149 533.9 413 69.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.3e-149 532.3 331 80.7
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 4.4e-149 531.9 411 69.1
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 5.7e-149 531.6 401 68.6
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 2.2e-148 529.6 472 63.3
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 3.1e-147 525.8 413 67.8
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 7.0e-147 524.6 404 70.8
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 2.0e-146 523.1 401 69.3
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 4.5e-146 521.9 370 72.7
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 4.5e-146 521.9 407 67.6
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.0e-145 520.8 399 69.4
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 8.5e-145 517.7 408 68.1
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.1e-144 517.3 402 67.7
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.4e-144 516.9 401 69.8
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.9e-144 516.5 401 68.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.9e-144 516.5 356 71.3
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.9e-144 516.5 402 67.7
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.2e-143 513.8 351 72.4
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.6e-143 513.5 417 65.7
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.1e-143 513.1 381 69.6
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.7e-143 512.7 393 69.0
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 4.7e-143 511.9 381 69.6
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.1e-143 511.5 400 67.2
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.0e-142 510.8 381 69.6
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.0e-142 510.8 381 69.6
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.0e-142 510.8 401 65.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.8e-142 510.0 401 68.1
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.8e-142 510.0 400 67.5
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.3e-142 509.6 403 67.5
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 2.3e-142 509.6 402 65.9
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.9e-142 508.8 399 67.2
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 5.2e-142 508.4 381 69.3
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 5.2e-142 508.4 403 66.3
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 6.7e-142 508.1 400 67.2
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 6.7e-142 508.1 422 67.3
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.1e-141 507.3 367 67.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.1e-141 507.3 410 66.6
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-141 506.5 412 65.3
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.6e-141 506.1 331 77.0
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 3.3e-141 505.8 410 66.3
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 5.7e-141 505.0 387 68.5
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 7.4e-141 504.6 397 66.8
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.7e-140 502.3 363 68.0
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 4.1e-139 498.8 423 61.0
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.0e-138 496.5 398 64.8
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 4.5e-138 495.4 429 62.7
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 5.0e-137 491.9 428 62.4
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.5e-136 490.3 331 73.7
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 4.2e-136 488.8 333 73.6
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 5.5e-136 488.4 404 64.6
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 9.4e-136 487.6 401 64.3
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.6e-135 486.9 403 65.0
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.1e-135 486.5 403 64.3
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.7e-135 486.1 404 64.4
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.7e-135 485.3 400 65.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 4.7e-135 485.3 381 67.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 4.7e-135 485.3 381 66.9
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 6.7e-134 481.5 400 64.8
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 8.8e-134 481.1 403 64.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 8.8e-134 481.1 401 64.6
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.0e-133 479.9 402 64.7
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.0e-133 479.9 398 64.1
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.1e-131 472.2 330 73.0
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 5.0e-129 465.3 393 62.1
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.7e-127 459.5 334 72.5
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.2e-120 435.6 347 66.3
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.8e-119 433.0 355 61.4
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.0e-118 431.0 302 70.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.7e-116 422.5 291 74.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.3e-113 413.3 394 57.4
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.8e-111 406.4 414 58.0
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-110 404.4 343 58.9
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.4e-110 404.1 361 58.2
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.1e-110 402.9 337 59.1
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 8.9e-110 401.4 411 53.8
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.4e-109 399.1 336 60.7
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.7e-108 396.0 403 56.6
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 8.9e-102 374.8 329 57.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.7e-100 370.5 445 51.9
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.1e-96 357.8 316 54.7
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.9e-96 357.1 284 69.4
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.1e-86 324.7 285 62.5
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.8e-79 300.1 313 45.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.1e-78 298.1 330 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 9.0e-78 295.0 318 46.9
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-77 293.5 222 73.0
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.2e-75 286.6 308 47.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.3e-72 275.4 310 45.8
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.5e-69 267.7 303 45.9
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-68 263.1 293 44.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-67 261.2 283 46.6
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.2e-67 259.6 306 42.2
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.5e-66 256.5 248 60.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-64 251.5 307 40.7
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.6e-64 249.2 223 63.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 5.6e-64 249.2 299 42.5
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.1e-63 245.4 288 43.4
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.4e-62 244.6 154 80.5
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 5.3e-62 242.7 179 65.4
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-57 227.3 267 41.9
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 5.3e-54 216.1 201 61.2
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.9e-51 207.6 344 37.2
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.7e-49 199.1 153 60.1
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.2e-47 192.2 181 58.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-46 190.7 121 81.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.9e-45 186.0 350 34.9
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.7e-45 185.7 327 31.8
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-44 183.0 354 34.2
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.5e-43 180.6 145 62.8
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 3.2e-43 180.3 218 45.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-43 179.9 354 34.2
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.7e-40 169.5 318 30.2
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-39 167.9 316 33.5
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-34 151.8 311 32.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-34 150.6 321 29.3
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.7e-31 140.2 310 30.0
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 7.7e-29 132.5 80 82.5
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.2e-28 131.0 77 81.8
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.2e-28 131.0 293 30.0
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.0e-28 129.8 295 31.9
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-26 125.2 103 54.4
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-26 124.8 119 53.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 3.6e-26 123.6 340 26.8
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.8e-25 121.3 313 30.7
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.3e-25 120.9 76 75.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.8e-25 119.0 321 29.6
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.1e-24 118.6 218 32.1
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-22 111.7 168 35.7
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.6e-21 107.5 311 30.5
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 4.7e-18 96.7 356 24.4
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 3.0e-17 94.0 306 26.8
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 1.9e-11 74.7 61 65.6
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.0e-09 67.4 149 31.5
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.9e-07 60.1 92 41.3


User provided reference genes

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