Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1741.5 870 100.0
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1250.3 878 72.4
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1248.0 875 72.2
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1245.0 878 71.4
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1244.2 887 71.1
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1241.1 880 71.9
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1233.0 880 71.8
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1218.4 890 69.4
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1206.0 879 70.5
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1204.9 869 69.9
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1198.3 881 70.3
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1192.2 886 68.2
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1186.4 867 69.7
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1176.0 877 67.8
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1171.0 876 68.4
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1171.0 877 68.4
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1169.1 824 70.6
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1164.4 812 71.1
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1163.7 873 67.8
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1162.5 818 70.4
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1149.8 818 69.9
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1145.6 820 69.5
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1139.8 889 65.7
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1136.3 876 66.4
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1135.6 881 65.4
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1132.5 817 67.7
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1131.7 877 66.2
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1131.7 814 68.6
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1128.6 875 65.1
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1125.9 877 64.0
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1124.8 872 64.4
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1122.8 893 65.1
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 824 67.7
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1117.4 880 65.1
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1114.4 823 67.3
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1112.4 892 63.2
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1111.7 853 65.8
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1111.3 821 66.1
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1110.1 849 67.1
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1109.7 889 63.8
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1108.2 879 66.8
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1108.2 823 67.2
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1107.4 879 62.9
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1105.5 830 66.3
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1103.6 877 63.9
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1102.4 872 63.6
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1101.7 876 62.9
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1101.3 876 65.0
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1099.7 880 62.6
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1099.3 888 65.2
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1095.1 879 62.8
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 0.0e+00 1095.1 877 62.7
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1092.8 926 60.4
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1090.9 873 62.4
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1090.1 819 65.7
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1088.6 819 65.2
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1088.6 816 65.7
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1088.2 881 61.9
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1087.4 879 61.9
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1085.1 819 65.1
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1083.6 882 62.6
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1082.8 880 61.9
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1082.8 880 61.9
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1082.0 817 67.0
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 882 61.9
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1080.1 822 66.4
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 0.0e+00 1077.0 867 60.9
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1075.1 870 63.1
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 1.2e-311 1073.2 761 69.5
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 7.7e-310 1067.0 911 61.5
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 1.7e-309 1065.8 843 63.8
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 5.0e-309 1064.3 886 61.9
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 4.7e-307 1057.7 817 63.0
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.7e-304 1049.3 814 64.1
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 4.8e-304 1047.7 879 62.2
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 3.1e-303 1045.0 908 59.4
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 1.1e-300 1036.6 695 73.2
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 4.7e-299 1031.2 811 65.5
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 2.3e-298 1028.9 832 63.1
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 5.2e-298 1027.7 799 64.7
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 1.1e-297 1026.5 878 62.0
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 7.5e-297 1023.8 831 63.3
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 1.5e-292 1009.6 836 59.4
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 1.8e-290 1002.7 832 61.2
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 3.4e-289 998.4 723 70.1
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.8e-285 984.9 738 64.4
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 6.8e-282 974.2 695 70.4
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 4.1e-279 964.9 801 59.3
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 5.4e-279 964.5 867 58.4
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 1.6e-278 963.0 769 65.9
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 2.2e-272 942.6 641 70.4
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 1.5e-268 929.9 782 62.3
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 2.8e-267 925.6 659 71.5
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 1.4e-263 913.3 908 54.8
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 4.1e-263 911.8 848 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 2.8e-243 845.9 854 50.8
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 6.2e-235 818.1 752 60.1
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 8.4e-232 807.7 861 47.9
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 1.7e-224 783.5 855 48.3
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 3.8e-224 782.3 744 53.2
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.2e-201 707.6 752 51.6
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 2.5e-191 673.3 594 54.2
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 3.0e-189 666.4 509 66.6
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 1.3e-176 624.4 481 65.7
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 2.0e-161 573.9 813 41.1
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 2.9e-155 553.5 800 39.8
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 3.9e-152 543.1 548 55.3
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 5.6e-119 433.0 401 56.6
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 4.6e-113 413.3 300 69.0
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 1.8e-109 401.4 405 54.6
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 3.8e-107 393.7 299 66.9
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 2.0e-92 344.7 244 68.0
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 1.9e-90 338.2 246 63.8
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 4.2e-90 337.0 197 78.7
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 9.4e-90 335.9 188 81.9
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 6.1e-89 333.2 186 82.3
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 1.3e-78 298.9 420 39.8
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.4e-72 278.9 217 57.6
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 3.3e-71 274.2 201 60.7
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 4.9e-46 190.7 147 57.1
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 1.1e-42 179.5 128 59.4
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 5.1e-27 127.5 179 44.7
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.1e-26 126.3 164 41.5
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 2.1e-12 79.0 503 22.5
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 6.6e-11 73.9 190 29.5
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 1.9e-10 72.4 111 42.3
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.3e-09 69.7 67 56.7
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 1.6e-09 69.3 90 48.9
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 5.3e-08 64.3 392 21.9


User provided reference genes

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