Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 4.9e-254 880.6 421 100.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 2.1e-220 768.8 419 84.0
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 4.7e-220 767.7 418 84.4
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 8.8e-219 763.5 418 84.2
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 1.7e-217 759.2 421 81.9
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 2.4e-216 755.4 419 82.8
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 2.0e-215 752.3 418 82.1
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.5e-215 751.5 417 82.3
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 2.2e-214 748.8 421 82.2
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 2.2e-214 748.8 417 82.0
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 2.9e-214 748.4 421 81.9
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 2.9e-214 748.4 415 82.9
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 3.8e-214 748.0 420 81.4
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.1e-213 746.5 419 80.7
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 1.5e-213 746.1 417 82.0
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 3.2e-213 745.0 417 82.5
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.1e-212 742.3 417 82.0
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 2.1e-212 742.3 421 81.5
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 4.7e-212 741.1 417 80.3
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 1.0e-211 740.0 417 81.3
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.0e-211 738.4 417 81.5
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 2.6e-210 735.3 413 81.6
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 2.6e-210 735.3 417 81.3
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 3.3e-210 734.9 418 80.9
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 7.5e-210 733.8 417 80.6
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 2.2e-209 732.3 417 79.6
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.8e-209 731.9 417 79.4
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 3.7e-209 731.5 417 80.8
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 6.3e-209 730.7 417 79.9
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.1e-208 729.9 450 76.9
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.8e-208 729.2 419 79.0
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 2.4e-208 728.8 421 78.1
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 1.2e-207 726.5 421 77.9
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.2e-207 726.5 418 79.9
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.2e-207 726.5 418 79.7
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 1.2e-207 726.5 421 78.6
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 1.2e-207 726.5 419 78.8
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.6e-207 726.1 397 84.9
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.6e-207 726.1 421 79.1
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.0e-207 725.7 417 79.4
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 3.5e-207 724.9 444 76.1
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 4.5e-207 724.5 419 78.5
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 4.5e-207 724.5 418 79.7
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.7e-207 723.8 418 79.2
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.7e-207 723.8 418 79.4
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 7.7e-207 723.8 444 75.9
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 7.7e-207 723.8 419 78.5
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 7.7e-207 723.8 419 78.3
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.3e-206 723.0 419 79.0
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 1.3e-206 723.0 419 78.5
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.7e-206 722.6 417 78.9
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 1.7e-206 722.6 419 78.0
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.7e-206 722.6 417 78.2
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.2e-206 722.2 418 79.4
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.9e-206 721.8 417 79.4
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 8.5e-206 720.3 423 78.5
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 8.5e-206 720.3 419 77.1
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 8.5e-206 720.3 419 78.0
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 2.5e-205 718.8 415 79.3
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 7.2e-205 717.2 419 77.8
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.6e-204 716.1 417 77.5
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 2.1e-204 715.7 419 77.3
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 2.7e-204 715.3 420 77.9
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 2.7e-204 715.3 421 78.1
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 3.6e-204 714.9 422 78.0
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 3.6e-204 714.9 419 77.6
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 4.7e-204 714.5 419 77.3
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 4.7e-204 714.5 417 77.5
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 8.0e-204 713.8 419 76.8
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.4e-203 713.0 419 76.6
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 2.3e-203 712.2 419 77.3
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 4.0e-203 711.4 419 77.8
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 5.2e-203 711.1 420 76.0
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 8.8e-203 710.3 418 77.8
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 8.8e-203 710.3 457 73.3
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.2e-202 709.9 419 77.1
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 7.5e-202 707.2 419 77.3
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 9.8e-202 706.8 418 77.5
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 6.3e-201 704.1 400 80.8
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 8.3e-201 703.7 418 77.8
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 1.8e-200 702.6 421 76.5
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 5.4e-200 701.0 427 76.8
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 7.0e-200 700.7 419 75.4
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 8.6e-198 693.7 421 74.8
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 2.5e-197 692.2 404 80.2
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.3e-195 685.6 502 65.3
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 8.8e-195 683.7 417 75.8
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 5.7e-194 681.0 417 75.8
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 5.7e-194 681.0 436 74.3
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 9.8e-194 680.2 402 76.4
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 1.7e-193 679.5 420 74.8
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 2.2e-193 679.1 402 76.4
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 2.8e-193 678.7 398 76.9
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 3.7e-193 678.3 398 76.9
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 4.9e-193 677.9 426 72.1
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 8.3e-193 677.2 427 72.1
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 2.4e-192 675.6 418 75.1
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 7.0e-192 674.1 454 69.6
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 5.9e-191 671.0 435 73.6
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 5.9e-191 671.0 412 75.2
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 9.5e-189 663.7 395 76.5
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 6.1e-188 661.0 459 69.5
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 2.4e-184 649.0 427 69.8
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 4.1e-184 648.3 423 68.6
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 1.2e-183 646.7 421 69.1
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 4.6e-183 644.8 418 73.9
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 3.9e-182 641.7 405 72.6
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 5.6e-181 637.9 421 71.3
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 3.7e-177 625.2 401 73.3
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 2.3e-166 589.3 372 74.7
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 6.6e-166 587.8 421 65.1
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 5.2e-163 578.2 419 62.5
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 6.8e-163 577.8 418 64.4
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 2.7e-159 565.8 417 66.2
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 1.0e-158 563.9 417 62.8
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.2e-154 550.4 436 63.5
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 2.2e-153 546.2 417 64.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 8.4e-153 544.3 358 68.2
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 1.9e-152 543.1 299 80.6
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 5.4e-144 515.0 358 66.8
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 3.7e-140 502.3 422 54.7
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 4.0e-131 472.2 274 78.5
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.0e-129 467.6 465 54.8
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 7.1e-128 461.5 464 54.3
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 2.5e-125 453.0 478 48.5
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 2.7e-119 433.0 469 47.3
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.5e-109 400.6 424 49.3
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 8.1e-47 192.2 116 72.4
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 8.1e-31 139.0 89 69.7
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 8.1e-31 139.0 89 69.7
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.4e-30 138.3 116 56.9
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 2.0e-29 134.4 93 65.6
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 2.6e-29 134.0 81 76.5
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 2.5e-19 100.9 69 63.8
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 7.1e-19 99.4 66 68.2
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 3.5e-18 97.1 66 66.7
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 6.0e-18 96.3 136 42.6
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.9e-18 95.9 55 76.4
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 1.0e-17 95.5 64 68.8
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.3e-09 68.6 175 30.9
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 6.7e-09 66.2 83 44.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.5e-08 65.1 229 26.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.8e-07 60.1 166 28.3
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 6.3e-07 59.7 37 64.9


User provided reference genes

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