Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 2.3e-105 385.6 195 100.0
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 8.6e-44 181.0 190 53.7
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.2e-42 177.2 194 53.1
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.1e-41 174.1 199 50.3
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.4e-41 173.7 194 52.1
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.8e-41 173.3 202 50.5
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 3.1e-41 172.6 194 53.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 6.8e-41 171.4 199 47.7
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-40 170.6 195 52.8
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.5e-40 170.2 195 52.8
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.8e-40 168.3 197 54.3
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 5.8e-40 168.3 194 50.0
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 7.6e-40 167.9 195 52.3
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.6e-40 167.9 195 52.3
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 2.2e-39 166.4 184 50.0
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 4.9e-39 165.2 230 44.3
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 1.9e-38 163.3 193 49.2
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 3.2e-38 162.5 198 48.5
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.1e-38 162.2 197 48.2
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.7e-36 156.8 200 46.5
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 3.0e-36 156.0 196 46.4
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-36 156.0 200 46.0
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 3.9e-36 155.6 194 47.4
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-35 153.7 184 48.4
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.6e-35 151.0 188 47.9
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-34 150.6 182 48.4
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.6e-34 150.2 185 47.6
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.6e-34 149.1 190 47.9
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.1e-33 147.5 120 61.7
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-33 147.5 190 47.4
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-33 147.5 184 47.3
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.1e-33 147.5 175 48.6
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-33 146.4 190 47.9
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-33 146.4 185 47.6
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-33 146.0 190 47.4
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.1e-33 146.0 185 47.0
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 3.1e-33 146.0 188 45.2
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.8e-32 141.7 180 46.1
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.3e-31 140.6 187 45.5
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 8.4e-31 137.9 181 47.5
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.1e-30 137.5 192 44.8
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.2e-30 136.0 183 46.4
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 9.3e-30 134.4 192 44.3
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.2e-29 134.0 187 45.5
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.2e-29 134.0 180 45.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.6e-29 133.7 170 47.1
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 4.6e-29 132.1 203 41.4
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.6e-29 132.1 187 42.8
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 7.8e-29 131.3 190 43.7
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.0e-28 131.0 216 39.8
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.3e-28 130.6 194 42.8
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.3e-28 130.6 194 42.3
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.3e-28 130.6 189 43.4
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.3e-28 129.8 190 43.2
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 3.0e-28 129.4 169 46.7
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.6e-28 128.3 202 39.6
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 8.7e-28 127.9 183 41.5
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 1.1e-27 127.5 160 44.4
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 1.9e-27 126.7 183 42.6
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 2.5e-27 126.3 198 44.4
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.6e-27 125.2 176 43.2
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.6e-27 125.2 202 40.1
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 7.3e-27 124.8 191 42.4
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.3e-26 124.0 202 40.1
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 2.1e-26 123.2 205 41.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 4.8e-26 122.1 195 40.0
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 1.1e-25 120.9 185 41.1
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.1e-25 120.9 175 45.7
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 4.0e-25 119.0 194 40.7
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 5.3e-25 118.6 190 40.0
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.2e-24 117.5 189 39.7
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 3.4e-24 115.9 203 42.9
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 4.5e-24 115.5 186 40.9
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 5.8e-24 115.2 185 40.0
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-23 114.0 184 40.2
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.2e-23 113.2 104 56.7
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 2.2e-23 113.2 176 41.5
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.9e-23 112.8 171 42.7
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 3.8e-23 112.5 196 39.8
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 4.9e-23 112.1 178 38.8
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 6.4e-23 111.7 185 39.5
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 6.4e-23 111.7 185 39.5
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.1e-22 110.9 192 40.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 1.4e-22 110.5 197 39.1
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.4e-22 110.5 177 42.9
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.4e-22 110.5 195 42.1
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 3.2e-22 109.4 167 43.1
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.4e-22 108.6 146 44.5
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 7.1e-22 108.2 124 47.6
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 3.5e-21 105.9 154 40.9
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.6e-21 105.5 180 41.7
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 4.6e-21 105.5 193 38.3
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 7.9e-21 104.8 200 39.5
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 7.9e-21 104.8 200 39.5
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 7.9e-21 104.8 187 41.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.3e-20 104.0 173 40.5
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.0e-20 102.8 159 42.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 5.1e-20 102.1 178 41.6
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.1e-20 102.1 188 39.4
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 8.7e-20 101.3 181 39.8
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 8.7e-20 101.3 188 37.8
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 8.7e-20 101.3 86 65.1
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-19 100.1 141 44.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-19 100.1 141 44.7
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 4.3e-19 99.0 173 35.8
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.6e-19 98.6 180 40.0
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 9.6e-19 97.8 149 43.0
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-18 97.4 184 36.4
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.8e-18 96.3 167 38.3
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.8e-18 96.3 177 39.0
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 2.8e-18 96.3 206 32.5
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 4.8e-18 95.5 178 38.8
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 6.2e-18 95.1 186 38.7
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.4e-17 94.0 161 37.9
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-17 93.6 163 37.4
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-17 93.2 184 35.3
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 2.4e-17 93.2 184 35.3
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.4e-17 93.2 188 34.6
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 4.0e-17 92.4 171 38.6
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 6.9e-17 91.7 177 36.2
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-16 90.9 150 42.0
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.5e-16 90.5 180 37.8
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-16 90.1 167 38.9
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 2.6e-16 89.7 232 31.9
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 3.4e-16 89.4 176 35.8
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 3.4e-16 89.4 176 35.8
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 4.5e-16 89.0 163 36.8
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 4.5e-16 89.0 151 39.1
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.8e-16 88.6 150 40.0
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 5.8e-16 88.6 176 36.9
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 9.9e-16 87.8 128 42.2
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.9e-16 87.8 155 40.6
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 3.8e-15 85.9 178 34.8
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 3.8e-15 85.9 167 35.3
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 4.9e-15 85.5 174 36.8
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.9e-15 85.5 178 33.7
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.1e-14 84.3 178 33.7
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 1.1e-14 84.3 186 38.7
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 1.1e-14 84.3 203 34.0
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 1.4e-14 84.0 186 38.7
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-14 83.2 169 34.9
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 2.4e-14 83.2 169 34.9
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 2.4e-14 83.2 87 56.3
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 4.2e-14 82.4 152 39.5
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 5.5e-14 82.0 127 38.6
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-13 80.9 169 34.9
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 6.0e-13 78.6 157 35.0
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-12 77.4 172 35.5
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-12 77.4 172 35.5
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-12 77.4 172 35.5
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.8e-12 77.0 91 45.1
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 3.0e-12 76.3 188 33.5
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 5.1e-12 75.5 152 36.8
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 8.7e-12 74.7 127 33.9
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 8.7e-12 74.7 127 33.9
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 8.7e-12 74.7 148 33.8
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.5e-11 73.9 104 50.0
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-11 73.2 152 36.2
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 2.5e-11 73.2 152 36.2
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.5e-11 73.2 188 33.0
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-11 72.8 53 64.2
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-11 72.8 53 64.2
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-10 70.9 127 35.4
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.2e-10 68.6 127 33.1
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.2e-08 64.3 67 46.3
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 2.0e-08 63.5 62 50.0
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 2.2e-07 60.1 95 37.9
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 3.8e-07 59.3 74 37.8
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 6.5e-07 58.5 87 35.6
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 8.4e-07 58.2 78 39.7
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 1.1e-06 57.8 68 48.5
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 1.4e-06 57.4 58 51.7
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.5e-06 56.6 104 37.5
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 2.5e-06 56.6 78 39.7
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 2.5e-06 56.6 72 47.2
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 3.2e-06 56.2 74 39.2
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 3.2e-06 56.2 74 39.2
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 4.2e-06 55.8 65 46.2
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 5.5e-06 55.5 120 31.7
Sed0023203 Sechium edule HOM05D004036 ORTHO05D004576 5.5e-06 55.5 78 42.3
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 7.1e-06 55.1 64 46.9
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 7.1e-06 55.1 78 38.5
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 9.3e-06 54.7 108 35.2
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 9.3e-06 54.7 64 46.9
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 9.3e-06 54.7 161 31.7
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 9.3e-06 54.7 88 36.4
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 9.3e-06 54.7 104 36.5


User provided reference genes

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