Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 3.8e-185 651.4 330 100.0
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 8.1e-111 404.4 332 65.7
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.3e-108 397.1 328 64.9
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.9e-108 396.0 335 65.4
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 8.4e-108 394.4 336 62.8
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.4e-107 393.7 336 61.9
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 5.4e-107 391.7 336 62.2
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 9.3e-107 391.0 335 61.8
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.6e-106 390.2 333 64.9
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.6e-106 388.7 338 62.7
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 2.3e-105 386.3 319 63.9
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 3.0e-105 386.0 331 64.4
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 5.6e-104 381.7 338 61.2
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-103 380.6 325 61.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.6e-103 380.2 302 67.2
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.3e-102 375.2 320 62.2
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.2e-101 374.0 303 65.0
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-101 374.0 322 61.2
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.5e-101 373.6 332 60.5
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 5.8e-101 371.7 313 61.3
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 5.8e-101 371.7 318 62.3
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.6e-101 371.3 323 61.0
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 7.6e-101 371.3 339 58.7
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.0e-100 370.9 318 62.3
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.7e-100 370.2 306 63.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.2e-100 369.8 324 62.3
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 2.9e-100 369.4 315 61.9
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.1e-99 367.5 326 60.4
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.4e-99 367.1 292 65.8
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.4e-99 367.1 311 61.7
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.5e-99 366.3 344 58.7
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 4.2e-99 365.5 321 61.4
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.2e-99 365.5 336 60.7
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.2e-99 365.5 337 61.7
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 5.5e-99 365.2 324 62.3
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.1e-99 364.8 336 58.6
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.3e-99 364.4 328 59.8
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.7e-98 362.8 328 59.5
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.7e-98 362.8 253 72.3
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.0e-98 361.7 309 63.4
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.0e-97 360.9 322 60.2
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 2.3e-97 359.8 307 62.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 6.7e-97 358.2 326 58.9
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.5e-96 357.1 340 58.5
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 3.3e-96 355.9 328 58.8
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 4.3e-96 355.5 332 59.3
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 4.3e-96 355.5 324 59.6
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 4.3e-96 355.5 252 69.0
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 9.6e-96 354.4 337 56.4
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 3.7e-95 352.4 283 63.6
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 6.2e-95 351.7 322 57.5
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.1e-94 350.9 332 57.8
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.8e-94 350.1 332 58.1
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 5.3e-94 348.6 322 57.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 9.0e-94 347.8 291 63.2
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 9.0e-94 347.8 291 63.2
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 9.0e-94 347.8 339 58.1
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.5e-93 347.1 320 56.2
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.5e-93 347.1 320 56.2
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.5e-93 347.1 334 57.2
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.5e-93 347.1 327 56.9
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 3.4e-93 345.9 324 55.6
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 3.4e-93 345.9 319 57.4
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.5e-93 345.5 317 59.6
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 5.8e-93 345.1 322 55.9
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.0e-92 344.4 346 54.6
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.3e-92 344.0 319 56.1
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 3.8e-92 342.4 320 55.6
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.0e-92 342.0 344 55.5
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.1e-91 340.9 331 57.7
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.9e-91 340.1 339 56.0
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.5e-91 339.7 339 55.2
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 5.5e-91 338.6 323 55.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 5.5e-91 338.6 264 65.9
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 9.3e-91 337.8 303 57.4
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.6e-90 337.0 338 54.7
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-90 336.7 331 55.9
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.6e-90 335.5 331 56.2
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.0e-89 332.8 341 55.1
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.3e-88 328.9 338 54.7
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 4.3e-88 328.9 345 53.9
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.3e-87 327.4 331 55.6
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 2.8e-87 326.2 320 55.3
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.8e-87 326.2 289 59.5
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 6.3e-87 325.1 340 54.7
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.2e-87 324.7 291 59.5
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.4e-86 323.9 331 55.9
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.1e-86 322.8 306 54.2
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.0e-85 320.1 324 54.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 2.6e-85 319.7 264 63.6
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 5.9e-85 318.5 320 55.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.7e-84 317.0 341 51.3
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 5.0e-84 315.5 320 54.1
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 8.5e-84 314.7 366 53.0
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.4e-83 313.9 312 54.5
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.5e-83 313.2 340 52.1
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.2e-83 312.4 340 52.1
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 5.5e-83 312.0 335 49.3
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.1e-82 310.1 318 51.3
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.7e-82 309.7 338 52.1
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.7e-82 309.7 340 51.8
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.6e-82 309.3 354 51.7
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 4.6e-82 308.9 334 51.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.9e-82 308.1 275 57.1
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.4e-81 307.4 295 56.3
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.8e-81 307.0 340 50.3
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.3e-81 306.6 338 50.0
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.1e-81 305.4 338 50.3
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 5.1e-81 305.4 288 55.6
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 6.7e-81 305.1 338 50.0
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 8.8e-81 304.7 343 50.7
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.1e-80 304.3 342 50.6
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-80 304.3 258 60.5
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.5e-80 303.1 316 53.2
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 5.7e-80 302.0 328 49.7
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 5.7e-80 302.0 279 60.9
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 2.2e-79 300.1 247 57.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.2e-79 300.1 260 59.2
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-79 299.7 260 59.2
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 8.2e-79 298.1 338 49.7
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 8.2e-79 298.1 260 59.6
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 8.2e-79 298.1 279 55.6
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 8.2e-79 298.1 255 59.2
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-78 297.7 274 55.8
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.4e-78 297.4 267 55.8
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.4e-78 296.6 329 49.5
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.4e-78 296.6 338 49.4
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 3.1e-78 296.2 274 56.6
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 5.3e-78 295.4 325 50.5
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 5.3e-78 295.4 330 51.5
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.1e-78 294.7 325 48.0
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.2e-77 294.3 261 55.9
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.0e-77 293.5 318 50.3
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.4e-77 292.7 253 56.5
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 3.4e-77 292.7 279 54.5
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.5e-77 292.4 326 50.9
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 5.9e-77 292.0 330 49.7
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.2e-76 290.0 350 48.3
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 2.2e-76 290.0 339 48.7
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 5.0e-76 288.9 252 59.1
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.1e-75 287.7 337 49.3
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.5e-75 286.6 252 57.1
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 2.1e-74 283.5 327 51.1
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 2.1e-74 283.5 282 53.9
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.6e-74 282.7 252 56.3
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.8e-73 280.4 252 56.0
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 9.7e-72 274.6 245 56.3
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.7e-71 272.7 270 57.0
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.4e-65 254.2 283 50.5
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.5e-64 250.8 161 75.8
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.2e-63 246.9 284 46.5
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 2.4e-62 243.4 230 57.8
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.1e-62 243.0 325 42.8
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.4e-59 231.5 162 67.9
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 2.0e-56 223.8 179 57.5
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.6e-56 223.4 248 50.8
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.0e-53 213.8 234 49.6
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.1e-51 208.0 223 54.3
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.5e-51 205.7 150 68.7
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.8e-49 200.7 154 63.6
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.5e-48 197.6 288 47.6
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.4e-48 196.1 235 47.2
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 3.1e-46 189.9 204 54.4
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 2.9e-44 183.3 245 45.3
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 7.0e-38 162.2 256 37.1
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 3.6e-34 149.8 223 41.7
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.2e-32 144.8 128 62.5
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.7e-29 133.7 88 71.6
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 2.8e-26 123.6 88 70.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.9e-23 112.8 80 65.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 3.5e-21 106.7 78 70.5
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 4.6e-21 106.3 83 63.9
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.3e-20 104.0 76 64.5
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.7e-15 87.8 120 40.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.3e-11 73.6 56 60.7


User provided reference genes

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